View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18517_high_9 (Length: 265)
Name: NF18517_high_9
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18517_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 40654501 - 40654240
Alignment:
| Q |
1 |
ttatgttttccgattttcagcttcagtaagggtaaagcaaaagtctgtacaaaatctgacttcttttgcacttgttctaattaacatgcctaatttttca |
100 |
Q |
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| T |
40654501 |
ttatgtttttcgattttcagcttcagtaagggtaaagcaaaagtctgtacaaaatctgacttcttttgcacttgttctaattaacatgcctaatttttca |
40654402 |
T |
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| Q |
101 |
ttgtgatttggaacgagtctattctatgagatcttttggtggattgtcaatccaatcattcaaataaaaagagaaacaaaaatggagtgctgaaatttca |
200 |
Q |
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| T |
40654401 |
ttgtgatttggaatgagtctattctatgagatcttttggtggattgtcaatccaatcattcaaataaaaagagaaacaaaaatggagtgctgaaatttca |
40654302 |
T |
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| Q |
201 |
gcaatcatttgcttcttcatctttcacctcctccccctcctgcttttacagaataatctacc |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |
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| T |
40654301 |
gcaatcatttgcttcttcatctttcacctcctccccctgctgcttttacagattaatttacc |
40654240 |
T |
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