View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18517_low_11 (Length: 343)
Name: NF18517_low_11
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18517_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 78 - 331
Target Start/End: Complemental strand, 44723018 - 44722766
Alignment:
| Q |
78 |
gcctgctctattctattctatgtagtaaaacatgatatcaaataataaggttttggtcaactgatactagtaagcacaaaaataattggtctttaccctt |
177 |
Q |
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| T |
44723018 |
gcctgctctattctattctatgtagtaaaacatgatatcaa-taataaggttttggtcaactgatactagtaagcacaaaaataattggtctttaccctt |
44722920 |
T |
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| Q |
178 |
cctccaagggagatactagtaaagtcctcctctgtttccattttttattttacatataaaaagaagaagaaatggaaaacaaaattgatttctgttaatt |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44722919 |
cctccaagggagatactagtaaagtcctcctctgtttccattttttattttacatataaaaagaagaagaaatggaaaacaaaattgatttgtgttaatt |
44722820 |
T |
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| Q |
278 |
aataatgcctatcttattgttttcgtaaagtaacacttttcttttttctatttt |
331 |
Q |
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| T |
44722819 |
aataatgcctatcttattgttttcgtaaagtaacacttttcttttttctatttt |
44722766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 44723079 - 44723047
Alignment:
| Q |
17 |
agtaagaaccttgataccactattagccaattg |
49 |
Q |
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| T |
44723079 |
agtaagaaccttgataccactattagccaattg |
44723047 |
T |
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