View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18517_low_12 (Length: 305)
Name: NF18517_low_12
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18517_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 41705409 - 41705132
Alignment:
| Q |
19 |
ggtggtggtgtttatggcggtggaagcgtgacaatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctattatggagagtgagtg |
118 |
Q |
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| T |
41705409 |
ggtggtggtgtttatggcggtggaagcgtgataatgagtgagttgaggtggatttaaggaggtggtgggttgtgttgaattctatcatggagagtgagtg |
41705310 |
T |
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| Q |
119 |
tgttagaggtaatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgatgaggagaaataacaggggagaagccatttggttaaaca--gta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41705309 |
tgttagaggtaatagtagcatttgagatgaagaatgtgaaatgaagagtgtgatgaggaggagaaataacaggggagaagccatttggttaaacagggta |
41705210 |
T |
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| Q |
217 |
tttgnnnnnnnngtgttggaacttgaatacagagagaggagaagagtttttgaatttgtagatggagtggtgtgtgatgat |
297 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705209 |
tttg-tttttttgtgttggaacttgaatac--agagaggagaagagtttttgaatttgtagatggagtggtgtgtgatgat |
41705132 |
T |
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