View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18517_low_13 (Length: 268)
Name: NF18517_low_13
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18517_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 13166855 - 13166613
Alignment:
| Q |
11 |
acaaaatacacaatagccacaaagctaaaaacacaaaacttgaccaataccgaagctgtaatttctacttaggacacacaaaacactgaagccacaaaga |
110 |
Q |
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| T |
13166855 |
acaaaatacacaatagccacaaagcacaaaacacaaaacttgaacaataccgaagctgtgatttctacttaggacacacaaaacactgaagccacaaaga |
13166756 |
T |
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| Q |
111 |
cacttccaaacctgaccaacgaaaatcccaaaagaccaacactataaattaaaccaaatcaatcacacaacattcccaaatttttgggaacacaaaagcg |
210 |
Q |
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| T |
13166755 |
cacttccaaacctgaccaatgaaaatcccaaaagaccaacactataaattaaaccaaatcaatcacacaaaattcccaaatttttgggaacacaaaagcg |
13166656 |
T |
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| Q |
211 |
gaagcgagtaataattcacggcggatcaaacgatgctcttgat |
253 |
Q |
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| T |
13166655 |
gaagcgagtaataattcacggcggatcaaacgatgctcttgat |
13166613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 10740855 - 10740759
Alignment:
| Q |
157 |
aattaaaccaaatcaatcacacaacattcccaaatttttgggaacacaaaagcggaagcgagtaataattcacggcggatcaaacgatgctcttgat |
253 |
Q |
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| T |
10740855 |
aattaaaccaaatcaatcacacaacattcccaaacttttgggaactcaactgcggaagcgacagatcattcaaggaggatcaaaccatgctcttgat |
10740759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 9401891 - 9401822
Alignment:
| Q |
145 |
accaacactataaattaaaccaaatcaatcacacaacattcccaaatttttgggaacacaaaagcggaag |
214 |
Q |
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| T |
9401891 |
accaaaactaaaaatcaaaccaaatcaatcacacaatattcccaaatttttgggaactcaacaacggaag |
9401822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 17927761 - 17927820
Alignment:
| Q |
156 |
aaattaaaccaaatcaatcacacaacattcccaaatttttgggaacacaaaagcggaagc |
215 |
Q |
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| T |
17927761 |
aaattaaaccaaatcaatcacacaacattcccaaacttttgaaaactcaatagcggaagc |
17927820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 21812782 - 21812725
Alignment:
| Q |
138 |
ccaaaagaccaacactataaattaaaccaaatcaatcacacaacattcccaaattttt |
195 |
Q |
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| T |
21812782 |
ccaaaagaccaattctagaaactaaaccaaatcaaacacgcaacattcccaacttttt |
21812725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 24224836 - 24224762
Alignment:
| Q |
144 |
gaccaacactataaattaaaccaaatcaatcacacaacattcc-caaatttttgggaacacaaaagcggaagcga |
217 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||| |||||| |
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| T |
24224836 |
gaccaacattaaaaattaaaccaaatcaatcacacaacattccttaaacttttgggaactcaatagcgaaagcga |
24224762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 30385488 - 30385434
Alignment:
| Q |
147 |
caacactataaattaaaccaaatcaatcacacaacattcccaaatttttgggaac |
201 |
Q |
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|||||||| |||||||||||| |||||||||||||||| ||||| |||||||||| |
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| T |
30385488 |
caacactacaaattaaaccaagtcaatcacacaacattgccaaaattttgggaac |
30385434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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