View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18517_low_17 (Length: 247)
Name: NF18517_low_17
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18517_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 49271854 - 49272090
Alignment:
| Q |
1 |
gactacccagaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271854 |
gactacccagaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagg |
49271953 |
T |
|
| Q |
101 |
gttacggattacatcaagagggcatgttttgtttcttgtatgtcctaatgtaatgcctccattgtcggcccaaagtggaaatacgtagtaaccttcacct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271954 |
gttacggattacatcaagagggcatgttttgtttcttgtgtgtcctaatgtaatgcctccattgtcggcccaaagtggaaatacgtagtaaccttcacct |
49272053 |
T |
|
| Q |
201 |
ggtttaagagggttaccttgtttgtctactactgcct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49272054 |
ggtttaagagggttaccttgtttgtctactactgcct |
49272090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 49277777 - 49278013
Alignment:
| Q |
1 |
gactacccagaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagg |
100 |
Q |
| |
|
||||||||| || |||||||||| |||||| |||||||||||||||||||||||| | | || || ||||||| || || | ||| || || ||||| |
|
|
| T |
49277777 |
gactacccaatattggaatctcaacggtgagatcagtgagagttggaatgtaatcatgttcatattcatagaaataaactggcgagccaatggcttcagg |
49277876 |
T |
|
| Q |
101 |
gttacggattacatcaagagggcatgttttgtttcttgtatgtcctaatgtaatgcctccattgtcggcccaaagtggaaatacgtagtaaccttcacct |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49277877 |
gttacggataacatcaagagggcatgttttgtttcttgtttgtcctaatgttatgcctccattgtcagcccaaagtggaaatacgtagtaaccttcacct |
49277976 |
T |
|
| Q |
201 |
ggtttaagagggttaccttgtttgtctactactgcct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49277977 |
ggtttaagagggttaccttgtttgtctactactgcct |
49278013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 139
Target Start/End: Original strand, 49269445 - 49269544
Alignment:
| Q |
40 |
gagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgt |
139 |
Q |
| |
|
|||||||||||| | || ||||| ||||||||| ||||| || | ||||| | | | ||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
49269445 |
gagttggaatgtgtttaaaacctggtgcagagaagtacactggcgagccgagttctttagggttacgaattacatcaagaggacatgttttgtttcttgt |
49269544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University