View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18517_low_18 (Length: 244)
Name: NF18517_low_18
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18517_low_18 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 35105790 - 35106034
Alignment:
| Q |
1 |
atgagatgga-catcatcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaa |
99 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||||||||||||||| ||| | |||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
35105790 |
atgagatggatcaacatcataaaaaacagggaaaacagtttgtttcaatcttttacggcattcagcaacagtagccatctcttccaaacaccatgttgac |
35105889 |
T |
|
| Q |
100 |
tcggcatatctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgat |
199 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35105890 |
tcggcatatctttcagagaagacaacaatagaaacccgagaattttgaattgcttgaagaagttgcggcgaaagggattctcctttctcaagcctttgat |
35105989 |
T |
|
| Q |
200 |
catccttgaaggcaaaaataccctttctttttagatgagcataaa |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35105990 |
catccttgaaggcaaaaataccctttctttttagatgagcataaa |
35106034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 35183753 - 35183980
Alignment:
| Q |
14 |
catcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttg |
113 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||| | ||| ||||||||||||| ||||||||||||||||| | ||||| || ||||| ||| |
|
|
| T |
35183753 |
catcataaaaaatagggaaaacagtctgtttcaattctgtatgatattcagcaatagtggccatctcttccaaacataatgttgactccgcataattttt |
35183852 |
T |
|
| Q |
114 |
agagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggca |
213 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||| || |
|
|
| T |
35183853 |
agagaagacaacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcg |
35183952 |
T |
|
| Q |
214 |
aaaataccctttctttttagatgagcat |
241 |
Q |
| |
|
||||||||||| || |||||||||||| |
|
|
| T |
35183953 |
aaaatacccttagttgttagatgagcat |
35183980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 35054891 - 35055121
Alignment:
| Q |
14 |
catcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttg |
113 |
Q |
| |
|
||||||||||| ||||||||| |||||||| || | ||| || |||||||| | ||||||||||||||||||||| ||||| ||||||||| ||| |
|
|
| T |
35054891 |
catcataaaaaatagggaaaactgtttgtttgaaatactcacaacaatcagcaattgcagccatctcttccaaacaccaagttgattcggcatatgtttt |
35054990 |
T |
|
| Q |
114 |
agagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggca |
213 |
Q |
| |
|
|||||||||||||||| |||||| ||| || |||||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
35054991 |
agagaagacaacaataaaaattcgcgaatttcgaattgcttgtagaagctgcggtgaaataaattctcctttctcaagacttttgtcatccttgaaggca |
35055090 |
T |
|
| Q |
214 |
aaaataccctttctttttagatgagcataaa |
244 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| |
|
|
| T |
35055091 |
aaaataccttttcttgttagatgagcataaa |
35055121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 35177756 - 35177985
Alignment:
| Q |
15 |
atcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttga |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||| || || | | |||||| ||||||||||||| |||||||||||||| ||||| || |||||||||| |
|
|
| T |
35177756 |
atcataaaaaacagggaaaacagtttgtaagaaattgctacgacattcaacaatagtagccatttcttccaaacaccatgttgactcagcatatctttct |
35177855 |
T |
|
| Q |
115 |
gagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaa |
214 |
Q |
| |
|
||||||||||| ||||| || | |||| || |||||||||| |||||||| | |||||| ||||||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
35177856 |
gagaagacaacgatagatatccgtgaatttgcaattgcttgtcgaagttgcagcgaaaggcattctcctttctcgagccttttatcatccttgaacgcaa |
35177955 |
T |
|
| Q |
215 |
aaataccctttctttttagatgagcataaa |
244 |
Q |
| |
|
||||||| |||||| ||||||||||||||| |
|
|
| T |
35177956 |
aaataccttttcttgttagatgagcataaa |
35177985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 60 - 244
Target Start/End: Original strand, 35169510 - 35169694
Alignment:
| Q |
60 |
ttcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtaga |
159 |
Q |
| |
|
|||| |||| |||||||| |||||||||||||| ||||| || |||||||||| |||||||||||||||||||| | |||| || |||||||||| || |
|
|
| T |
35169510 |
ttcaacaatggtagccatttcttccaaacaccatgttgactcagcatatctttctgagaagacaacaatagaaatccgtgaatttgtaattgcttgtcga |
35169609 |
T |
|
| Q |
160 |
agttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagcataaa |
244 |
Q |
| |
|
|||||| ||||| | ||||||||||||| ||||||| ||||||||||||||| |||| ||||||||| ||||||||||||||| |
|
|
| T |
35169610 |
tgttgcgttgaaaagcattctcctttctctagccttttatcatccttgaaggcgaaaacaccctttctagttagatgagcataaa |
35169694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 239
Target Start/End: Complemental strand, 25484514 - 25484341
Alignment:
| Q |
66 |
aatagtagccatctcttccaaacaccacgttgaatcggcata-tctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttg |
164 |
Q |
| |
|
||||| |||||| || ||||||||||| |||||| ||||| |||||| ||||| ||||| |||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
25484514 |
aatagcagccatttcatccaaacaccatgttgaagaagcataatctttg-gagaaaacaacgatagaaatgcgtgactgttgaattgcttgtagaagttg |
25484416 |
T |
|
| Q |
165 |
cggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagc |
239 |
Q |
| |
|
||||||| || ||||||||||| ||| | ||||||||||||| |||||||| ||||| || |||||||| |
|
|
| T |
25484415 |
gggtgaaatggcttctcctttctgtagctgcttgtcatccttgaaggtgaaaataccttttctattgagatgagc |
25484341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University