View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18517_low_19 (Length: 238)

Name: NF18517_low_19
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18517_low_19
NF18517_low_19
[»] chr7 (9 HSPs)
chr7 (1-238)||(29578199-29578436)
chr7 (1-231)||(29582375-29582605)
chr7 (12-61)||(8537454-8537503)
chr7 (144-226)||(8609464-8609546)
chr7 (8-61)||(8383577-8383630)
chr7 (14-61)||(8601394-8601441)
chr7 (8-61)||(8569725-8569778)
chr7 (125-166)||(17259764-17259805)
chr7 (125-166)||(17267467-17267508)
[»] chr2 (1 HSPs)
chr2 (142-238)||(43624957-43625053)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 29578436 - 29578199
Alignment:
Q  1 agagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaacatggatggatacaccaagttggttatctacacttgtctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578436 agagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaacatggatggatacaccaagttggttatctacacttgtctt 29578337  T
Q  101 acatctatcctcagtcatcttaataggaattggagtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578336 acatctatcctcagtcatcttaataggaattggagtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgta 29578237  T
Q  201 atatctcacaagaccaaatttggaacattcttgatgcc 238  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  29578236 atatctcgcaagaccaaatttggaacattcttaatgcc 29578199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 29582605 - 29582375
Alignment:
Q  1 agagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaacatggatggatacaccaagttggttatctacacttgtctt 100  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  || || ||||||| |||||||||||||||||||||    
T  29582605 agagactaaacaaacccagcaagttgttctcactggcttttattctctcaccctcataaacattaattgagacaccaaattggttatctacacttgtctt 29582506  T
Q  101 acatctatcctcagtcatcttaataggaattggagtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgta 200  Q
    |||||| || || ||||||||   |||||| ||||||||| |||||||||| |||||||||| ||||||||||||  |||||||||| ||||||||||||    
T  29582505 acatctttcttctgtcatcttggcaggaatgggagtgttcctaggaatcaccacactcatgatatctccttttgttgatataccaagtgacaagggtgta 29582406  T
Q  201 atatctcacaagaccaaatttggaacattct 231  Q
    ||||||  |||||  |||| |||||||||||    
T  29582405 atatcttgcaagataaaatctggaacattct 29582375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 8537454 - 8537503
Alignment:
Q  12 aaacccaacaagttgttctcactggcttttattctctcaccctcataaac 61  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8537454 aaacccaacaagttgttctcactggctttcattctctcaccctcataaac 8537503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 8609464 - 8609546
Alignment:
Q  144 ggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaac 226  Q
    ||||||| ||||||||| |||||||||||| || |||||||||| ||||| ||||||| ||||| ||  ||||| ||||||||    
T  8609464 ggaatcaatacactcatcacatctccttttatcgatataccaagtgacaaaggtgtaacatctcgcagcaccaagtttggaac 8609546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 8383630 - 8383577
Alignment:
Q  8 aaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaac 61  Q
    ||||||||| ||||||||||||||| | ||||| | ||||||||||||||||||    
T  8383630 aaacaaacctaacaagttgttctcattagctttcaatctctcaccctcataaac 8383577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 8601394 - 8601441
Alignment:
Q  14 acccaacaagttgttctcactggcttttattctctcaccctcataaac 61  Q
    ||||||||||||||||||||| ||||||| |||||| || ||||||||    
T  8601394 acccaacaagttgttctcacttgcttttaatctctcgccttcataaac 8601441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 8569725 - 8569778
Alignment:
Q  8 aaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaac 61  Q
    ||||||||| | ||||||||| |||||  |||||| ||||||||||||||||||    
T  8569725 aaacaaaccaagcaagttgttgtcactatcttttaatctctcaccctcataaac 8569778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 17259764 - 17259805
Alignment:
Q  125 aggaattggagtgttcttaggaatcactacactcatgacatc 166  Q
    |||||||| ||||||| |||||||||| ||||||||||||||    
T  17259764 aggaattgaagtgttcctaggaatcaccacactcatgacatc 17259805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 17267467 - 17267508
Alignment:
Q  125 aggaattggagtgttcttaggaatcactacactcatgacatc 166  Q
    |||||||| ||||||| |||||||||| ||||||||||||||    
T  17267467 aggaattgaagtgttcctaggaatcaccacactcatgacatc 17267508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 43624957 - 43625053
Alignment:
Q  142 taggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgcc 238  Q
    |||||||||| |||||||||||| |||| ||  |  | |||||||| ||||| || |||| ||||| ||  ||||| |||||||||||||| |||||    
T  43624957 taggaatcaccacactcatgacacctcccttgtttaagataccaagtgacaaaggggtaacatctcgcagcaccaattttggaacattcttaatgcc 43625053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University