View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18517_low_22 (Length: 235)

Name: NF18517_low_22
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18517_low_22
NF18517_low_22
[»] chr7 (6 HSPs)
chr7 (1-222)||(45269645-45269863)
chr7 (1-222)||(45273186-45273411)
chr7 (1-161)||(45278918-45279083)
chr7 (1-115)||(45281635-45281749)
chr7 (1-145)||(45292942-45293089)
chr7 (1-145)||(45301902-45302049)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45269863 - 45269645
Alignment:
Q  1 tgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgtttttgtacaggggatccaccagaaatacaaacgaaaatttgctcgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45269863 tgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgtttttgtacaggagatccaccagaaatacaaacgaaaatttgctcgaa 45269764  T
Q  101 tgaaagtataagcttcttcaattttcatttgatcattcaaatatattattcagaagtgttactgcaagcttcatacacaaaaacgnnnnnnngcttaatc 200  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       ||||||||    
T  45269763 tgaaagtataag---cttcaattttcatttgatcattcaaatatattattcagaagcgttactgcaagcttcatacacaaaaacgtttttttgcttaatc 45269667  T
Q  201 catattgttaatagaagctatt 222  Q
    ||||||||||||||||||||||    
T  45269666 catattgttaatagaagctatt 45269645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45273411 - 45273186
Alignment:
Q  1 tgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgtttttgtacaggggatccaccagaaatacaaacgaaaatttgctcgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  45273411 tgtgatgcatggctcggagacaaattgttattctttgtaataatctttgctgtttttgtacaggggatccaccagtaatacaaatgaaaatttgctcgaa 45273312  T
Q  101 tgaaagtataagcttc----ttcaattttcatttgatcattcaaatat-attattcagaagtgttactgcaagcttcatacacaaaaacgnnnnnnngct 195  Q
    ||| ||||||||||||    |||| ||||| ||||||||||||||||| ||||| |||||  |||||||||| |||||||||||||||||       |||    
T  45273311 tgatagtataagcttcaattttcatttttcctttgatcattcaaatataattatacagaaacgttactgcaaacttcatacacaaaaacgtttttttgct 45273212  T
Q  196 taatccatattgttaatagaagctatt 222  Q
    ||| |||||||||||||||||||||||    
T  45273211 taa-ccatattgttaatagaagctatt 45273186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 45279083 - 45278918
Alignment:
Q  1 tgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgtttttgtacaggggatccaccagaaatacaaacgaaaatttgctcgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||||| |||||||||||||||    
T  45279083 tgtgatgcatggctcggagacaaattgttattctttgtaattatctttcctatttttgtacatgagatccaccagaaatacaaatgaaaatttgctcgaa 45278984  T
Q  101 tgaaagtataagcttc---ttcaattttcatttgatcattcaaatat--attattcagaagtgtta 161  Q
    | | ||| ||||||||   ||  |||||  ||| |||||||||||||  |||||||||||||||||    
T  45278983 ttatagtttaagcttcaattttcattttttttttatcattcaaatataaattattcagaagtgtta 45278918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 45281749 - 45281635
Alignment:
Q  1 tgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgtttttgtacaggggatccaccagaaatacaaacgaaaatttgctcgaa 100  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||| | ||||| |||| | ||||| ||||||||||||| |||||||||||||||    
T  45281749 tgtgatgcatgggtcggagacaaattgttattctttgtaattatctttcgtatttttatacatgagatcccccagaaatacaaatgaaaatttgctcgaa 45281650  T
Q  101 tgaaagtataagctt 115  Q
    | | ||| |||||||    
T  45281649 ttatagtttaagctt 45281635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 45293089 - 45292942
Alignment:
Q  1 tgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgtttttgtacaggggatccaccagaaatacaaacgaaaatttgctcgaa 100  Q
    ||||||||||||| |  | ||||||| |||||||||||||| | ||| ||| | ||| | |||| ||||||||||||||||||| |||||||||||||||    
T  45293089 tgtgatgcatggcacataaacaaattattattctttgtaattacctt-cctatatttttccaggagatccaccagaaatacaaatgaaaatttgctcgaa 45292991  T
Q  101 tgaaagtataagcttc----ttcaattttcatttgatcattcaaatata 145  Q
    | | ||| ||||||||    |||| ||||| ||||||||||||||||||    
T  45292990 ttatagtttaagcttcaattttcatttttcttttgatcattcaaatata 45292942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 45302049 - 45301902
Alignment:
Q  1 tgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgtttttgtacaggggatccaccagaaatacaaacgaaaatttgctcgaa 100  Q
    ||||||||||||| |  | ||||||| |||||||||||||| | ||| ||| | ||| | |||| ||||||||||||||||||| |||||||||||||||    
T  45302049 tgtgatgcatggcacataaacaaattattattctttgtaattacctt-cctatatttttccaggagatccaccagaaatacaaatgaaaatttgctcgaa 45301951  T
Q  101 tgaaagtataagcttc----ttcaattttcatttgatcattcaaatata 145  Q
    | | ||| ||||||||    |||| ||||| ||||||||||||||||||    
T  45301950 ttatagtttaagcttcaattttcatttttcttttgatcattcaaatata 45301902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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