View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18517_low_3 (Length: 525)
Name: NF18517_low_3
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18517_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 16 - 505
Target Start/End: Original strand, 42677025 - 42677514
Alignment:
| Q |
16 |
atcaaagcgaatatgttttagtgtaatcagatctctttcgtgtggtataaagccattgccatttaattttttccatttgagcatggtgctgattttttgt |
115 |
Q |
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| T |
42677025 |
atcaaagcgaatatgttttagtgtaatcagatctctttcgtgtggtataaagccattgccatttaattctatccatttgagcatggtgctgattttttgt |
42677124 |
T |
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| Q |
116 |
cgttggaagctggtcctagccgcaaaccattggagaatacttcccatgttttgtatattgggttgattccacatggcttcaaagagatggagatggcgga |
215 |
Q |
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| T |
42677125 |
cgttggaagctggtcctagtcgcaaaccattggagaatacttcccatgttttgtatattggtttgattccacatggcttctaagagatggagatggcgaa |
42677224 |
T |
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| Q |
216 |
agcttattttggacaatttggaaccatcaagagattgagaatttccaccagaaaatcaagacatttttggttcgtagaatttgaatcctgaggtagcaaa |
315 |
Q |
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| T |
42677225 |
agcttattttggacaatttggaaccatcaagagattgagaatttccaccagaaaatcaagacatttttggttcatagaatttgaatcctgaggtagcaaa |
42677324 |
T |
|
| Q |
316 |
attgttgccgatactatgcacaattatttgctttgtgaacacatatatactacatgttttcgtggtaccttcagaacatgttcacgccatgtttgttttt |
415 |
Q |
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| T |
42677325 |
attgttgccgatactatgcacaattatttgctttttgaacacatatatactacatgttttcgtggtaccttcagaacatgttcacgccatgtttgttttt |
42677424 |
T |
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| Q |
416 |
taagtgtttgtaccgattctattatgaaccacgctagccatcaattgaaaaatattgtaaggggaggttaattcatacagctttgtctaa |
505 |
Q |
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| T |
42677425 |
taagtgtttgtaccgattctattgtgaaccacgctagccatcaattgaaaaatattgtaaggggaggttaattcatacagctttgtctaa |
42677514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 357
Target Start/End: Original strand, 52835029 - 52835123
Alignment:
| Q |
266 |
gaaaatcaagacatttttggttcgtagaatttgaatc--ctgaggtagcaaaa-ttgttgccgatactatgcacaattatttgctttgtgaacac |
357 |
Q |
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| T |
52835029 |
gaaaatcaagacattttggcttcatagaatttgaatctcctgaggtagcaaaaattgttgctgatactatgcacaattatttgctctttgaacac |
52835123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 52834967 - 52835009
Alignment:
| Q |
216 |
agcttattttggacaatttggaaccatcaagagattgagaatt |
258 |
Q |
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| T |
52834967 |
agcttattttggacaattcggtaccgtcaagagattgagaatt |
52835009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 399
Target Start/End: Complemental strand, 48968887 - 48968805
Alignment:
| Q |
313 |
aaaattgttgccgatactatgcacaattatttgctttgtgaacacatatatactacatgttttcgtggtaccttcagaacatgttca |
399 |
Q |
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| T |
48968887 |
aaaattgttgctgatactatgcacaattatttgctttttgaacac----ctactacaggtttttgtggtaccttcagaacatgttca |
48968805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 48969581 - 48969535
Alignment:
| Q |
216 |
agcttattttggacaatttggaaccatcaagagattgagaatttcca |
262 |
Q |
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| T |
48969581 |
agcttattttggacaatttggaaccatcaagagattgagaatttcca |
48969535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 48969784 - 48969712
Alignment:
| Q |
139 |
aaaccattggagaatacttcccatgttttgtatattgggttgattccacatggcttcaaagagatggagatgg |
211 |
Q |
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|||| |||||||||| |||||| ||||||||||||||| |||||||||||||||| | |||| |||||||| |
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| T |
48969784 |
aaacaattggagaattcttcccctgttttgtatattggtcggattccacatggcttctatgagaaggagatgg |
48969712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 48969030 - 48968994
Alignment:
| Q |
266 |
gaaaatcaagacatttttggttcgtagaatttgaatc |
302 |
Q |
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| T |
48969030 |
gaaaatcaagacattttgggttcatagaatttgaatc |
48968994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 494
Target Start/End: Complemental strand, 40900512 - 40900464
Alignment:
| Q |
446 |
acgctagccatcaattgaaaaatattgtaaggggaggttaattcataca |
494 |
Q |
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| T |
40900512 |
acgctagccatcaattgggaaatattgcaaagggaggttcattcataca |
40900464 |
T |
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