View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18517_low_4 (Length: 504)
Name: NF18517_low_4
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18517_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 490
Target Start/End: Original strand, 34485766 - 34486243
Alignment:
| Q |
16 |
atacactttttacataactcaatacagtaaacatgaaataatttagacaaagcaacaaaatgcatcatgcaagtcgcatagaagccatcgcatcacattc |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34485766 |
atacactttttacataactcaatacagtaaacatgaaataatttagacaaagcaacaaaatgcatcatgcaagttgcatagaagccatcgcatcacattc |
34485865 |
T |
|
| Q |
116 |
ttccttggcaaagcagcccctcttgaaaatgcatacacattctgnnnnnnnncact------caatcctgaacatcttgttcattgccagtttctgatgc |
209 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||| |
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| T |
34485866 |
ttccttggcaaagcagcccctcatgaaaatgcatacacattctgttttttttcactaaatctcaatcctgaacat-----tcattgccagtttctgatgc |
34485960 |
T |
|
| Q |
210 |
atctttctcgaagctgcaaacagaaaaccatctgcgatattttgacgaaaactaaaccata--ccttaataatgtgtataaagaactcagaattcagtca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |
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| T |
34485961 |
atctttctcgaagctgcaaacagaaaaccatctgcgatattttgacgaaaactaaaccatatacctttataatgtatataaagaactcagaattcagtca |
34486060 |
T |
|
| Q |
308 |
acaaatatctaatacatcaaagtttggaattgctacgtggttccacttcaaaattcagatattgctactggttttataagtaattaaccaaacatattca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34486061 |
acaaatatctaatacatcaaagtttggaattgctacgtggttccacttcaaaattcagatattgctactggttttataagtaattaaccaaacatattca |
34486160 |
T |
|
| Q |
408 |
aagagacgaataatacagattacatcttgagagaatgtgattgtgagccacaccacaggaagatattaaccagtcaagtaatt |
490 |
Q |
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| T |
34486161 |
aagagacgaataatacagattacatcttgagagaatgtgattgtgagccacaccacaggaagatattaaccagtcaagtaatt |
34486243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 175 - 490
Target Start/End: Original strand, 34484583 - 34484903
Alignment:
| Q |
175 |
tcctgaacatcttgttcattgccagtttctgatgcatctttctcgaagctgcaaacagaaaaccatctgcgatattttgacgaaaactaaaccatacctt |
274 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||||||||||||||||||||| |||||||||| | | |||||||| ||||||||||||||||| |
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| T |
34484583 |
tcctgaacatattgttcattgccagtttccggtgcatctttctcgaagctgcaaatagaaaaccataatcaaaattttgacagaaactaaaccatacctt |
34484682 |
T |
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| Q |
275 |
aataatgtgtataaagaactcagaattcagtcaacaaatatctaatacatcaaagtttggaat-tgctac--gtggttccacttcaaaattcagatattg |
371 |
Q |
| |
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||||| |||||||||||||| | |||| | |||||| |||| ||||||| || ||||| ||| | |||| |||| ||||||||||||||||||||| |
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| T |
34484683 |
aataacgtgtataaagaactaaaaattaattcaacagatattcaatacat-aatgtttgaaatgtactacatatggtatcacttcaaaattcagatattg |
34484781 |
T |
|
| Q |
372 |
ctactggttttataagtaattaaccaaacatattcaaagagacgaataatacaga-ttacatcttgagagaatgtgattgtgagccacaccacaggaaga |
470 |
Q |
| |
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|| | |||||| ||||| | | ||||| |||||||||||| || |||||| | |||| ||| |||||||| |||||||| ||| | |||| ||||| |
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| T |
34484782 |
cttcacgttttacaagtagtataataaacaaattcaaagagacaaagaatacatatttacttctcaagagaatgcgattgtgaaccatatcacatgaaga |
34484881 |
T |
|
| Q |
471 |
tattaac--cagtcaagtaatt |
490 |
Q |
| |
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||||||| ||||||||||||| |
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| T |
34484882 |
tattaaccacagtcaagtaatt |
34484903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 178 - 474
Target Start/End: Original strand, 34474996 - 34475292
Alignment:
| Q |
178 |
tgaacatcttgttcattgccagtttctgatgcatctttctcgaagctgcaaacagaaaaccatctgcgata-ttttgacgaaaact-aaaccatacctta |
275 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||||||||| |||||||||||||||||||| | | | | |||||| |||| | ||| || | ||| |
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|
| T |
34474996 |
tgaacatcttgttcattgccggtatctggtgcatctttctcaaagctgcaaacagaaaaccaacggtaaaaattttgaaaaaaaattaaagcagagttta |
34475095 |
T |
|
| Q |
276 |
ataatgtgtataaagaactcagaattcagtcaacaaatatctaatacatcaaagtttggaattg-ctacgtggttccacttcaaaattcagatattgcta |
374 |
Q |
| |
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||||||||||||||||||| | | | | ||||||||||| |||||||| || |||||||||| || | |||| ||||||||||||||||||||| | | |
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| T |
34475096 |
ataatgtgtataaagaacttaaactact-tcaacaaatatttaatacataaatgtttggaatttacttcatggtaccacttcaaaattcagatattacca |
34475194 |
T |
|
| Q |
375 |
ctggttttataagtaattaaccaaacatattcaaagagacgaataatacaga-ttacatcttgagagaatgtgattgtgagccacaccacaggaagatat |
473 |
Q |
| |
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| |||| |||||||||| |||||||||||||||||||||| |||||||| |||| ||| |||||||||||||||||| ||| | || |||||||||| |
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| T |
34475195 |
ca---tttacaagtaattaaacaaacatattcaaagagacgaagaatacagatttacttctcgagagaatgtgattgtgaaccatatcataggaagatat |
34475291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 347 - 490
Target Start/End: Original strand, 34504479 - 34504626
Alignment:
| Q |
347 |
gttccacttcaaaattcagatattgctactggttttataagtaattaaccaaacatattcaaagagacgaataata---cagatt-acatcttgagagaa |
442 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| |||||||| || ||| || ||| |||||| |
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| T |
34504479 |
gttccacttcaaaattcagatattactacatgttttataagtaattaaacaaacatattcaaagagaagaataataatacatatttacttctccagagaa |
34504578 |
T |
|
| Q |
443 |
tgtgattgtgagccacaccacaggaagatattaaccagtcaagtaatt |
490 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||| |||| |||||||| |
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| T |
34504579 |
tgtgattgtgaaccatatcacaggaagatattaatcagttaagtaatt |
34504626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 347 - 490
Target Start/End: Original strand, 27615392 - 27615539
Alignment:
| Q |
347 |
gttccacttcaaaattcagatattgctactggttttataagtaattaaccaaacatattcaaagagacgaataata---cagatt-acatcttgagagaa |
442 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||| ||| |||||||||||||||||| |||||||| || ||| || ||| |||||| |
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| T |
27615392 |
gttccacttcaaaattcagatattactacatgttttataagtaaataaacaaacatattcaaagagaagaataataatacatatttacttctccagagaa |
27615491 |
T |
|
| Q |
443 |
tgtgattgtgagccacaccacaggaagatattaaccagtcaagtaatt |
490 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||| |||| |||||||| |
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|
| T |
27615492 |
tgtgattgtgaaccatatcacaggaagatattaatcagttaagtaatt |
27615539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 34461951 - 34462081
Alignment:
| Q |
207 |
tgcatctttctcgaagctgcaaacagaaaaccatctgcgatattttgacgaaaactaaaccataccttaataatgtgtataaagaactcagaattcagtc |
306 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||| | | |||||||| |||||||| |||||||||||||||||||||||||||| | | | || || |
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|
| T |
34461951 |
tgcatctttctcaaagctgcaaatagaaaaccatcagtaaaattttgacaaaaactaaggcataccttaataatgtgtataaagaacttaaactacaatc |
34462050 |
T |
|
| Q |
307 |
aacaaatatctaatacatcaaagtttggaat |
337 |
Q |
| |
|
||||||||| |||||||| || ||||||||| |
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| T |
34462051 |
aacaaatatttaatacataaatgtttggaat |
34462081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 27636588 - 27636652
Alignment:
| Q |
175 |
tcctgaacatcttgttcattgccagtttctgatgcatctttctcgaagctgcaaacagaaaacca |
239 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27636588 |
tcctgaacattgtgtccattgccagtttctgatgcatctttctcgaagctgcaaacagaaaacca |
27636652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 490
Target Start/End: Original strand, 27628209 - 27628272
Alignment:
| Q |
427 |
ttacatcttgagagaatgtgattgtgagccacaccacaggaagatattaaccagtcaagtaatt |
490 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||| | |||||| |
|
|
| T |
27628209 |
ttacttctcgagagaatgtgattgtgaaccataccacaggaagatattaaccagttaggtaatt |
27628272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 490
Target Start/End: Original strand, 34513998 - 34514061
Alignment:
| Q |
427 |
ttacatcttgagagaatgtgattgtgagccacaccacaggaagatattaaccagtcaagtaatt |
490 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||| | |||||| |
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|
| T |
34513998 |
ttacttctcgagagaatgtgattgtgaaccataccacaggaagatattaaccagttaggtaatt |
34514061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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