View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18517_low_6 (Length: 464)
Name: NF18517_low_6
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18517_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 27 - 455
Target Start/End: Original strand, 44115034 - 44115462
Alignment:
| Q |
27 |
gatctcattgatcgtttcaaggttttgcacaatgatctgattgaaaccgaacatgagacttttacatggttgttgaagtaatgatgtcaatgaattaaga |
126 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| || |
|
|
| T |
44115034 |
gatctgattgatcgtttcaaggttttgcacaatgatctgattgaaaccgaacatgagacttttacatggctgttcaagtaatgatgtcgatgaattagga |
44115133 |
T |
|
| Q |
127 |
aaatttggttaatgggttttgtgtattggtgatggtgttgttggggatgtatgtgatgatgaaattaatgtacgcatccccgacgatttgcttattcgta |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
44115134 |
aaatttggttaatgggttttgtgtattggtgatggtgttgttggggatacatgtgatgatgaaattaatgcacgtatccccgacgatttgcttattcgta |
44115233 |
T |
|
| Q |
227 |
gttcaggtgatcatgttgcgtcaattgcagagtgaatttacccttctattttgcataatattaatgatctagaatttttcagagatagagcaattttgac |
326 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44115234 |
gttcaggtgatcatgttgcgtcaattgtagagtgaatttacccttctattttgcataatattaatgatctataatttttcagagatagagcaattttgac |
44115333 |
T |
|
| Q |
327 |
gcctaagaatgtgattgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattcaccttgccccagt |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44115334 |
gcctaagaatgtgattgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattcaccttgtcccagt |
44115433 |
T |
|
| Q |
427 |
agtactgttgccaataggcctgatgatgt |
455 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
44115434 |
agtattgttgccaataggcctgatgatgt |
44115462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 79 - 455
Target Start/End: Original strand, 26001659 - 26002035
Alignment:
| Q |
79 |
atgagacttttacatggttgttgaagtaatgatgtcaatgaattaagaaaatttggttaatgggttttgtgtattggtgatggtgttgttggggatgtat |
178 |
Q |
| |
|
||||||||||| || ||||||| || | ||||||| ||||||||||||||||||| ||||||| ||| | |||||||||||||||||||| ||||||| |
|
|
| T |
26001659 |
atgagacttttgcacggttgttcaactgctgatgtcgatgaattaagaaaatttggagaatgggtattgggcattggtgatggtgttgttggagatgtat |
26001758 |
T |
|
| Q |
179 |
gtgatgatgaaattaatgtacgcatccccgacgatttgcttattcgtagttcaggtgatcatgttgcgtcaattgcagagtgaatttacccttctatttt |
278 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||| || |||| |||||| ||||||||||||||||| |
|
|
| T |
26001759 |
gtgatgatggaattaatgtacatatccccgacgacctgcttatctgtagttcaggtgatcatgttgcatctattgtagagtgcatttacccttctatttt |
26001858 |
T |
|
| Q |
279 |
gcataatattaatgatctagaatttttcagagatagagcaattttgacgcctaagaatgtgattgtggatgagattaataattatgttatgtctttgata |
378 |
Q |
| |
|
||| ||||| ||||||| ||| ||||| ||||||||||| |||||||||||||||||| ||||||| || || ||||| ||||||||||||||||||||| |
|
|
| T |
26001859 |
gcaaaatatgaatgatccagagttttttagagatagagctattttgacgcctaagaatttgattgtcgacgaaattaacaattatgttatgtctttgata |
26001958 |
T |
|
| Q |
379 |
cctggtgaagaaaggatatatttgagttgtgattcaccttgccccagtagtactgttgccaataggcctgatgatgt |
455 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||| |
|
|
| T |
26001959 |
cctggtgaagaaaggacatatttgagttgtgattcaccttgccccagtagtattgttgctaacaggcctgatgatgt |
26002035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 14231474 - 14231547
Alignment:
| Q |
340 |
attgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattc |
413 |
Q |
| |
|
||||| |||||| ||||||| |||||| ||||| | || || || |||||||||| |||||||||||||||||| |
|
|
| T |
14231474 |
attgttgatgaggttaataactatgttctgtctctcattcccggcgaagaaaggacatatttgagttgtgattc |
14231547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 413
Target Start/End: Original strand, 1264212 - 1264272
Alignment:
| Q |
353 |
ttaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattc |
413 |
Q |
| |
|
||||||| |||||||||||| | || || || |||||||||| |||||||||||||||||| |
|
|
| T |
1264212 |
ttaataactatgttatgtctctcattcccggcgaagaaaggacatatttgagttgtgattc |
1264272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 413
Target Start/End: Original strand, 21712915 - 21713019
Alignment:
| Q |
309 |
agatagagcaattttgacgcctaagaatgtgattgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgt |
408 |
Q |
| |
|
|||||||| |||||||| ||||| | ||| | ||| |||||||||||| ||||| | ||||| | || | ||||||||||| || ||||||||||||| |
|
|
| T |
21712915 |
agatagagttattttgacacctaaaattgtcactgttgatgagattaatgattataatttgtctctcattcttggtgaagaaaagacatatttgagttgt |
21713014 |
T |
|
| Q |
409 |
gattc |
413 |
Q |
| |
|
||||| |
|
|
| T |
21713015 |
gattc |
21713019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 413
Target Start/End: Complemental strand, 26907322 - 26907218
Alignment:
| Q |
309 |
agatagagcaattttgacgcctaagaatgtgattgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgt |
408 |
Q |
| |
|
||||| |||||| ||||| ||||| ||| ||| | |||||| ||||||| |||||| ||||| | || || || |||||||||| ||||||||||||| |
|
|
| T |
26907322 |
agataaagcaatattgactcctaaaaatacaatttttgatgaggttaataactatgttctgtctctcattcccggcgaagaaaggacatatttgagttgt |
26907223 |
T |
|
| Q |
409 |
gattc |
413 |
Q |
| |
|
||||| |
|
|
| T |
26907222 |
gattc |
26907218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 79 - 455
Target Start/End: Complemental strand, 21037903 - 21037527
Alignment:
| Q |
79 |
atgagacttttacatggttgttgaagtaatgatgtcaatgaattaagaaaatttggttaatgggttttgtgtattggtgatggtgttgttggggatgtat |
178 |
Q |
| |
|
||||||| ||| || ||||||| |||| ||||||| ||||||| ||||||||||| ||||||| ||| ||||||||||||| |||||||| ||||||| |
|
|
| T |
21037903 |
atgagacatttgcacggttgttcaagtgctgatgtcgatgaattgagaaaatttggagaatgggtattgggtattggtgatggggttgttggagatgtat |
21037804 |
T |
|
| Q |
179 |
gtgatgatgaaattaatgtacgcatccccgacgatttgcttattcgtagttcaggtgatcatgttgcgtcaattgcagagtgaatttacccttctatttt |
278 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||| || |||| |||||| ||||||||||||||||| |
|
|
| T |
21037803 |
gtgatgatggaattaatgtacatatccccgacgacctgcttatccgtagttcaggtgatcatgttgcatctattgtagagtgcatttacccttctatttt |
21037704 |
T |
|
| Q |
279 |
gcataatattaatgatctagaatttttcagagatagagcaattttgacgcctaagaatgtgattgtggatgagattaataattatgttatgtctttgata |
378 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||||| | || ||||| ||||||||||||||||||||| |
|
|
| T |
21037703 |
gcataatatgaatgatctagagttttttagagatagagctattttgacgcctaagaatttgattgtcaacgaaattaacaattatgttatgtctttgata |
21037604 |
T |
|
| Q |
379 |
cctggtgaagaaaggatatatttgagttgtgattcaccttgccccagtagtactgttgccaataggcctgatgatgt |
455 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21037603 |
cccggtgaagaaaggacatatttgagttgtgattcaccttgccccagtagtactgttgctaataggcctgatgatgt |
21037527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 224 - 455
Target Start/End: Complemental strand, 38895111 - 38894879
Alignment:
| Q |
224 |
gtagttcaggtgatcatgttgcgtcaattgcagagtgaatttacccttctattttgcataatattaatgatctagaatttttc-agagatagagcaattt |
322 |
Q |
| |
|
|||||||| ||||||||||||| || |||| |||||| |||||||||||||||||||||||||| |||||| ||| ||||| ||||||||||| |||| |
|
|
| T |
38895111 |
gtagttcaagtgatcatgttgcatctattgtagagtgcatttacccttctattttgcataatatgaatgattcagagtttttttagagatagagctattt |
38895012 |
T |
|
| Q |
323 |
tgacgcctaagaatgtgattgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattcaccttgccc |
422 |
Q |
| |
|
|||||||||||||| ||||||| || || ||||| ||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
38895011 |
tgacgcctaagaatttgattgtcgacgaaattaacaattatgttatgtctttgatacccggtgaagagaggacatatttgagttgtgattcaccttgccc |
38894912 |
T |
|
| Q |
423 |
cagtagtactgttgccaataggcctgatgatgt |
455 |
Q |
| |
|
|| ||||| |||||| ||||||||||||||||| |
|
|
| T |
38894911 |
cattagtattgttgctaataggcctgatgatgt |
38894879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 416
Target Start/End: Original strand, 36155022 - 36155125
Alignment:
| Q |
313 |
agagcaattttgacgcctaagaatgtgattgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgatt |
412 |
Q |
| |
|
||||| || ||||| || || ||||| ||||| || || |||||| ||||| | |||||||| | | ||||||||||| ||||||| |||||||||||| |
|
|
| T |
36155022 |
agagccatattgacacccaaaaatgtcattgttgaggaaattaatgattatatgttgtctttggtccatggtgaagaaaagatatatctgagttgtgatt |
36155121 |
T |
|
| Q |
413 |
cacc |
416 |
Q |
| |
|
|||| |
|
|
| T |
36155122 |
cacc |
36155125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 413
Target Start/End: Original strand, 17688950 - 17689010
Alignment:
| Q |
353 |
ttaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattc |
413 |
Q |
| |
|
||||||| |||||| ||||| | || |||| |||||||||| |||||||||||||||||| |
|
|
| T |
17688950 |
ttaataactatgttctgtctctcatttctggcgaagaaaggacatatttgagttgtgattc |
17689010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 413
Target Start/End: Original strand, 31687155 - 31687215
Alignment:
| Q |
353 |
ttaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattc |
413 |
Q |
| |
|
||||||| |||||| ||||| | || || || |||||||||| |||||||||||||||||| |
|
|
| T |
31687155 |
ttaataactatgttctgtctctcattcccggcgaagaaaggacatatttgagttgtgattc |
31687215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 458
Target Start/End: Complemental strand, 19252517 - 19252415
Alignment:
| Q |
356 |
ataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattcaccttgccccagtagtactgttgccaataggcctgatgatgt |
455 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||| | | ||||||||||||||| || ||||||| || || |||||||| ||||| ||||||||||| |
|
|
| T |
19252517 |
ataattatgttatgtctatgatacctggcgaagaaaaggtgtatttgagttgtgatacatcttgcccgagcagcactgttgcaaatagacctgatgatgt |
19252418 |
T |
|
| Q |
456 |
cca |
458 |
Q |
| |
|
||| |
|
|
| T |
19252417 |
cca |
19252415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 413
Target Start/End: Original strand, 25226214 - 25226318
Alignment:
| Q |
309 |
agatagagcaattttgacgcctaagaatgtgattgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgt |
408 |
Q |
| |
|
||||| |||||| ||||| ||||| ||| ||| | |||||| ||||||| |||||| ||||| | || || ||||||||||||| ||||||||||| | |
|
|
| T |
25226214 |
agataaagcaatattgactcctaaaaatacaatttttgatgaggttaataactatgttctgtctctcattcccggtgaagaaaggacatatttgagttat |
25226313 |
T |
|
| Q |
409 |
gattc |
413 |
Q |
| |
|
||||| |
|
|
| T |
25226314 |
gattc |
25226318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 413
Target Start/End: Complemental strand, 30443450 - 30443346
Alignment:
| Q |
309 |
agatagagcaattttgacgcctaagaatgtgattgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgt |
408 |
Q |
| |
|
||||| |||||| ||||| ||||| ||| ||||| |||||| ||||||| |||||| ||||| | || || || |||||||||| ||||||||||||| |
|
|
| T |
30443450 |
agataaagcaatattgactcctaaaaatacaattgttgatgaggttaataactatgttttgtctctcattcccggcgaagaaaggacatatttgagttgt |
30443351 |
T |
|
| Q |
409 |
gattc |
413 |
Q |
| |
|
||||| |
|
|
| T |
30443350 |
gattc |
30443346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 8163401 - 8163474
Alignment:
| Q |
340 |
attgtggatgagattaataattatgttatgtctttgatacctggtgaagaaaggatatatttgagttgtgattc |
413 |
Q |
| |
|
||||| |||||| ||||||| |||||| ||||| | || | || |||||||||| |||||||||||||||||| |
|
|
| T |
8163401 |
attgttgatgaggttaataactatgttctgtctctcatttccggcgaagaaaggacatatttgagttgtgattc |
8163474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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