View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18517_low_7 (Length: 450)

Name: NF18517_low_7
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18517_low_7
NF18517_low_7
[»] chr4 (23 HSPs)
chr4 (35-435)||(43537204-43537611)
chr4 (82-182)||(21994340-21994438)
chr4 (82-194)||(43537781-43537892)
chr4 (88-182)||(2438265-2438359)
chr4 (50-194)||(37600807-37600949)
chr4 (96-173)||(46426123-46426200)
chr4 (50-182)||(29248255-29248387)
chr4 (50-158)||(29249621-29249729)
chr4 (50-145)||(20963611-20963706)
chr4 (126-194)||(40450259-40450327)
chr4 (50-138)||(50879965-50880053)
chr4 (88-194)||(51754148-51754256)
chr4 (50-194)||(20962195-20962339)
chr4 (82-158)||(34741337-34741413)
chr4 (121-194)||(10682901-10682973)
chr4 (121-194)||(10896541-10896613)
chr4 (126-195)||(12388390-12388458)
chr4 (137-194)||(13032888-13032945)
chr4 (88-145)||(37421851-37421908)
chr4 (82-158)||(12566882-12566958)
chr4 (126-182)||(27449876-27449932)
chr4 (50-130)||(34739954-34740034)
chr4 (126-194)||(51353421-51353489)
[»] chr2 (25 HSPs)
chr2 (35-194)||(36565237-36565396)
chr2 (43-192)||(11102070-11102218)
chr2 (96-194)||(8237990-8238086)
chr2 (82-194)||(38876965-38877077)
chr2 (42-182)||(10355224-10355362)
chr2 (40-158)||(31551565-31551683)
chr2 (50-158)||(21903961-21904070)
chr2 (50-178)||(38876006-38876135)
chr2 (50-194)||(44368296-44368439)
chr2 (40-130)||(10355073-10355163)
chr2 (50-144)||(18249683-18249776)
chr2 (50-158)||(44366905-44367013)
chr2 (50-158)||(1902968-1903076)
chr2 (58-158)||(7577696-7577796)
chr2 (83-159)||(22293489-22293563)
chr2 (82-194)||(5969726-5969842)
chr2 (81-195)||(16670499-16670613)
chr2 (96-194)||(39151275-39151372)
chr2 (50-138)||(23834638-23834726)
chr2 (50-194)||(31551910-31552050)
chr2 (96-178)||(18250847-18250929)
chr2 (83-128)||(18416618-18416663)
chr2 (113-194)||(28781914-28781995)
chr2 (126-182)||(32596418-32596474)
chr2 (50-130)||(38813641-38813721)
[»] chr6 (11 HSPs)
chr6 (35-194)||(6000567-6000727)
chr6 (50-178)||(24914456-24914584)
chr6 (82-194)||(33485019-33485132)
chr6 (50-158)||(24235542-24235650)
chr6 (45-158)||(12322710-12322822)
chr6 (50-158)||(22056520-22056628)
chr6 (50-182)||(56024-56156)
chr6 (50-142)||(6917700-6917792)
chr6 (81-161)||(11424792-11424872)
chr6 (96-158)||(22058236-22058298)
chr6 (96-158)||(34762219-34762281)
[»] chr3 (26 HSPs)
chr3 (35-138)||(2011113-2011216)
chr3 (35-195)||(2011857-2012016)
chr3 (50-194)||(28208057-28208201)
chr3 (82-194)||(15093657-15093770)
chr3 (50-182)||(10615288-10615420)
chr3 (40-194)||(52396349-52396499)
chr3 (88-194)||(37975970-37976076)
chr3 (35-145)||(43929957-43930067)
chr3 (82-194)||(18704954-18705067)
chr3 (96-194)||(14824751-14824850)
chr3 (96-194)||(14826033-14826131)
chr3 (89-135)||(22257285-22257331)
chr3 (96-182)||(46610022-46610108)
chr3 (96-145)||(3207511-3207559)
chr3 (50-194)||(43930712-43930855)
chr3 (96-144)||(3188233-3188281)
chr3 (35-194)||(27318978-27319139)
chr3 (96-194)||(52395543-52395640)
chr3 (94-139)||(12071571-12071616)
chr3 (137-194)||(20123859-20123916)
chr3 (98-182)||(31835801-31835885)
chr3 (126-182)||(33898260-33898316)
chr3 (106-158)||(38344349-38344401)
chr3 (91-127)||(38842186-38842222)
chr3 (106-158)||(46207150-46207202)
chr3 (96-144)||(51116263-51116310)
[»] chr7 (16 HSPs)
chr7 (50-194)||(1831892-1832035)
chr7 (96-194)||(1830813-1830911)
chr7 (40-138)||(13771618-13771716)
chr7 (50-173)||(17763359-17763482)
chr7 (50-158)||(48170173-48170282)
chr7 (82-138)||(24436329-24436385)
chr7 (82-158)||(47637753-47637829)
chr7 (82-145)||(31433583-31433646)
chr7 (81-182)||(9553413-9553515)
chr7 (89-194)||(22718512-22718615)
chr7 (108-158)||(31927676-31927726)
chr7 (133-194)||(32200073-32200134)
chr7 (88-194)||(8175917-8176027)
chr7 (50-130)||(17764611-17764691)
chr7 (82-145)||(25274709-25274773)
chr7 (82-146)||(37413768-37413832)
[»] chr5 (22 HSPs)
chr5 (82-194)||(11438340-11438452)
chr5 (58-194)||(37274749-37274883)
chr5 (50-158)||(21776818-21776926)
chr5 (50-156)||(30798490-30798596)
chr5 (50-178)||(15060181-15060309)
chr5 (82-194)||(33750919-33751031)
chr5 (50-145)||(11956190-11956285)
chr5 (113-194)||(4060460-4060541)
chr5 (82-127)||(33847179-33847224)
chr5 (50-142)||(30796632-30796724)
chr5 (82-158)||(41064182-41064258)
chr5 (50-145)||(41065568-41065663)
chr5 (58-128)||(4061429-4061499)
chr5 (93-158)||(16095689-16095754)
chr5 (45-194)||(40434313-40434461)
chr5 (106-194)||(9751645-9751732)
chr5 (82-158)||(11957592-11957668)
chr5 (50-182)||(15615116-15615248)
chr5 (126-194)||(24801999-24802066)
chr5 (97-141)||(39419643-39419687)
chr5 (83-127)||(40434055-40434099)
chr5 (113-173)||(40765407-40765466)
[»] chr8 (18 HSPs)
chr8 (35-182)||(28561916-28562063)
chr8 (35-182)||(28567414-28567561)
chr8 (40-158)||(28575014-28575131)
chr8 (96-178)||(42350135-42350217)
chr8 (82-194)||(6105556-6105669)
chr8 (50-194)||(1602810-1602953)
chr8 (50-192)||(28574544-28574684)
chr8 (50-171)||(1601165-1601286)
chr8 (82-195)||(27164602-27164715)
chr8 (96-195)||(28561434-28561533)
chr8 (96-195)||(28566932-28567031)
chr8 (50-158)||(39809998-39810106)
chr8 (35-142)||(5703106-5703213)
chr8 (81-145)||(3252215-3252277)
chr8 (50-138)||(42349018-42349106)
chr8 (50-128)||(39808715-39808793)
chr8 (107-147)||(6820051-6820091)
chr8 (50-130)||(27163182-27163262)
[»] scaffold0250 (1 HSPs)
scaffold0250 (82-194)||(11512-11625)
[»] chr1 (22 HSPs)
chr1 (35-178)||(5560891-5561032)
chr1 (96-194)||(13917229-13917326)
chr1 (96-194)||(37194447-37194545)
chr1 (40-145)||(37193526-37193633)
chr1 (40-182)||(40372789-40372930)
chr1 (50-182)||(14625383-14625515)
chr1 (50-178)||(52084737-52084865)
chr1 (137-194)||(24963002-24963059)
chr1 (82-117)||(2256665-2256700)
chr1 (82-144)||(14626722-14626784)
chr1 (50-143)||(2273552-2273645)
chr1 (81-130)||(30537455-30537504)
chr1 (58-130)||(4487605-4487677)
chr1 (50-178)||(23322521-23322649)
chr1 (58-194)||(38741476-38741612)
chr1 (84-143)||(52305288-52305347)
chr1 (88-194)||(4488661-4488767)
chr1 (132-194)||(22791610-22791672)
chr1 (82-194)||(37268827-37268936)
chr1 (96-136)||(5561691-5561731)
chr1 (50-130)||(9441633-9441713)
chr1 (50-130)||(9442901-9442981)
[»] scaffold0933 (1 HSPs)
scaffold0933 (88-194)||(2667-2774)
[»] scaffold0129 (1 HSPs)
scaffold0129 (81-194)||(37334-37446)
[»] scaffold0227 (2 HSPs)
scaffold0227 (82-194)||(24881-24994)
scaffold0227 (96-128)||(23751-23783)
[»] scaffold0040 (1 HSPs)
scaffold0040 (82-178)||(64521-64616)
[»] scaffold0093 (1 HSPs)
scaffold0093 (58-157)||(8967-9066)
[»] scaffold0024 (1 HSPs)
scaffold0024 (96-182)||(139146-139234)
[»] scaffold0238 (1 HSPs)
scaffold0238 (88-146)||(3570-3628)
[»] scaffold0176 (1 HSPs)
scaffold0176 (82-178)||(230-327)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 35 - 435
Target Start/End: Complemental strand, 43537611 - 43537204
Alignment:
Q  35 atgcaacgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaa 134  Q
    |||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||||||| |||||||||||||||| |||||| ||||||||||| |||    
T  43537611 atgcaacgtcagtgacacatcaaagattctgctgagtcacaaggcatagggggcaatcctgaagaatctttattttacaaggacggaatctaaaaaaaaa 43537512  T
Q  135 aa-tttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacct----ggatattatcatatttggctttgctcctctgatt 229  Q
    || ||||||  |||||||||||||| || ||||||||| | |||||||| |||||||||||     |||||||||||||||||||| |||||||||||||    
T  43537511 aaatttacaaagaggaaaatcaaaactactctatattagagggggtaaagctctattaaccctttaggatattatcatatttggctatgctcctctgatt 43537412  T
Q  230 ctgaagtgaaggatctgg-gtcc-tctagttannnnnnnnnnnnnnnnnnnnnnggacaatgttctagttagttaatcaagcaaaaattttgagacctta 327  Q
    |||||||||||||||||| |||| ||||||||                      ||||||||||||||||||||||||||||| ||||||||||||||||    
T  43537411 ctgaagtgaaggatctggtgtccctctagttagttttttgttttgttttgttgtggacaatgttctagttagttaatcaagcataaattttgagacctta 43537312  T
Q  328 attagtggtaacaaaggaatgtgagcctcacatttatgtggttatattatgatcacacaaggtgcatattgcatatgtatggctggctgctaactttaca 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43537311 attagtggtaacaaaggaatgtgagcctcacatttatgtggttatattatgatcacacaaggtgcatattacatatgtatggctggctgctaactttaca 43537212  T
Q  428 gaagtttg 435  Q
    ||||||||    
T  43537211 gaagtttg 43537204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 21994438 - 21994340
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaa 181  Q
    ||||| |||||||||||||||||||||||| |||||| ||||||||||  ||||| ||||||||   |||||||||| | | |||||||||| |||||||    
T  21994438 agggggcaatcctaaagaatctttattttacaaggacggaatctaaaa--aaaaaattacaggggacaaaatcaaaagtgtcctatattacagggggtaa 21994341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 43537781 - 43537892
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaa 181  Q
    ||||| ||||||| |||||| ||||||||| |||||| ||||||||||| ||||| |||||||| |||||| ||||| ||| |||||||| | | |||||    
T  43537781 agggggcaatcctgaagaatttttattttagaaggacggaatctaaaaa-aaaaaattacaggggggaaaaccaaaagtatcctatattagaggaggtaa 43537879  T
Q  182 aactctattaacc 194  Q
    | |||| ||||||    
T  43537880 agctcttttaacc 43537892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 2438359 - 2438265
Alignment:
Q  88 caatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaa 182  Q
    ||||||| |||||||||||||||| |||||  ||||||||||| |||| |||||| ||   ||||||||| ||| ||||||||||| ||||||||    
T  2438359 caatcctgaagaatctttattttacaaggatggaatctaaaaaaaaaattttacaagggacaaaatcaaatatactctatattacagggggtaaa 2438265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 37600949 - 37600807
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||| | ||  ||| || |||||||||||||||||||||||| |||||| ||||| ||||  ||||| |||||||  | |    
T  37600949 cacatcagagattctgctgagtcataggacttagaggccaatcctaaagaatctttattttacaaggacggaatccaaaa--aaaaaattacaggaggca 37600852  T
Q  150 aaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    ||| ||||| || ||||||||| |  || |||| |||||||||||    
T  37600851 aaaccaaaagtaatctatattatagaggttaaagctctattaacc 37600807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 173
Target Start/End: Complemental strand, 46426200 - 46426123
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattaca 173  Q
    |||||||||||||||| |||||| ||||||||||| |||||||||||| | |||||| ||||| | | ||||||||||    
T  46426200 aagaatctttattttacaaggacggaatctaaaaaaaaaaatttacagaggggaaaaccaaaagtgtcctatattaca 46426123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 182
Target Start/End: Complemental strand, 29248387 - 29248255
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| |||||| ||||||||||| | |||||||||| | | |    
T  29248387 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaataaatttacagcgggta 29248288  T
Q  150 aaatcaaaaatattctatattacatggggtaaa 182  Q
    ||| ||||| | | |||||||||| ||||||||    
T  29248287 aaaccaaaagtgtcctatattacagggggtaaa 29248255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 29249621 - 29249729
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | |||||||||||||||| ||||||  |||||||||| |||||||||||||| | |    
T  29249621 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatctttattttacaaggacgaaatctaaaaaaaaaaatttacagggggca 29249720  T
Q  150 aaatcaaaa 158  Q
    ||| |||||    
T  29249721 aaaccaaaa 29249729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 20963611 - 20963706
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacaggg 145  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| |||||| ||||||||||| ||||||||||||||    
T  20963611 cacatcatagattctgctgagtcacagggctcaggggacaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaaatttacaggg 20963706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 40450327 - 40450259
Alignment:
Q  126 aaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    ||||| |||||||||||||||||||||  |||||||  |||||||||| |||||||||| | |||||||    
T  40450327 aaaaaaaaaaatttacagggaggaaaacaaaaaataacctatattacagggggtaaaacaccattaacc 40450259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 50880053 - 50879965
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatt 138  Q
    ||||||| ||||| ||||||||||||||    ||||| ||||||| || |||||||||||||  ||||| ||||||||||| |||||||    
T  50880053 cacatcatagattctgctgagtcacaaggctcagggggcaatcctgaaaaatctttattttaccaggacggaatctaaaaaaaaaaatt 50879965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 51754148 - 51754256
Alignment:
Q  88 caatcctaaagaatctttattttataaggacagaatctaaaaataaaaatt--tacagggaggaaaatcaaaaatattctatattacatggggtaaaact 185  Q
    ||||||| |||||||||||||||| |||||| ||||||||||| |||||    ||||||    |||| ||||| ||  |||||||||| |||||||| ||    
T  51754148 caatcctgaagaatctttattttacaaggacggaatctaaaaaaaaaaaaaaatacaggtgacaaaaccaaaagtaccctatattacagggggtaaagct 51754247  T
Q  186 ctattaacc 194  Q
    |||||||||    
T  51754248 ctattaacc 51754256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 20962339 - 20962195
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| |    ||| | ||||| | ||||||||| |||||| |||||| ||||||||||| |||  ||||||||| | |    
T  20962339 cacatcatagattctgctgagtcacagggctcaggaggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaatttttacagggggca 20962240  T
Q  150 aaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    ||| ||||| |    ||||||||| ||||||||  ||||||||||    
T  20962239 aaaccaaaagtgccatatattacagggggtaaagatctattaacc 20962195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 34741337 - 34741413
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaa 158  Q
    ||||| ||||| | ||||||||| |||||| |||||| ||||||||||| |||| ||||||||| | |||| |||||    
T  34741337 agggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaattttacagggggcaaaaccaaaa 34741413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 10682901 - 10682973
Alignment:
Q  121 aatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    |||||||||| ||||  |||||||| | ||||||||||||  ||||||||||| ||||||||||  ||||||||    
T  10682901 aatctaaaaaaaaaatattacagggtgtaaaatcaaaaattatctatattaca-ggggtaaaacaatattaacc 10682973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 10896541 - 10896613
Alignment:
Q  121 aatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    |||||||||| ||||  |||||||| | ||||||||||||  ||||||||||| ||||||||||  ||||||||    
T  10896541 aatctaaaaaaaaaatattacagggtgtaaaatcaaaaattatctatattaca-ggggtaaaacaatattaacc 10896613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 12388390 - 12388458
Alignment:
Q  126 aaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacct 195  Q
    ||||| ||||||||||||||||| ||| | |||||| ||||||||||| | |||||||| || |||||||    
T  12388390 aaaaaaaaaaatttacagggagg-aaaccgaaaatactctatattacaggaggtaaaacactgttaacct 12388458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 13032945 - 13032888
Alignment:
Q  137 tttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    |||||||||||||||| |||||||   |||||||||| |||||||||| | |||||||    
T  13032945 tttacagggaggaaaaccaaaaatgacctatattacagggggtaaaacaccattaacc 13032888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 37421851 - 37421908
Alignment:
Q  88 caatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacaggg 145  Q
    ||||||| || ||||||||||||| |||||  ||||||||||| ||||| ||||||||    
T  37421851 caatcctgaataatctttattttacaaggatggaatctaaaaaaaaaaaattacaggg 37421908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 12566882 - 12566958
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaa 158  Q
    ||||| ||||| | ||||||||| |||||| ||||||||||||||| ||  ||| ||||||||| | |||| |||||    
T  12566882 agggggcaatcttgaagaatcttcattttacaaggacagaatctaagaaacaaattttacagggggcaaaaccaaaa 12566958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 27449932 - 27449876
Alignment:
Q  126 aaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaa 182  Q
    |||||||| | |||||||||| |||||| ||||||  ||||||||||| ||||||||    
T  27449932 aaaaataatattttacagggaagaaaataaaaaatgatctatattacagggggtaaa 27449876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 34740034 - 34739954
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaa 130  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| |||||| |||||||||||    
T  34740034 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaa 34739954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 51353421 - 51353489
Alignment:
Q  126 aaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    ||||| |||||||||||||| |||||| || ||||   |||||||||| |||||||| | |||||||||    
T  51353421 aaaaaaaaaaatttacaggggggaaaaccagaaatgacctatattacagggggtaaatcactattaacc 51353489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 35 - 194
Target Start/End: Complemental strand, 36565396 - 36565237
Alignment:
Q  35 atgcaacgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaa 134  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||  ||| ||| ||||||| |||||||||||||||| |||||| ||||||||||  |||    
T  36565396 atgccacgtcagtgacacatcaaagattctgctgagtcccaaggcatatggggcaatcctgaagaatctttattttacaaggacggaatctaaaataaaa 36565297  T
Q  135 aatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    |||||||||||||||||| ||||| | || ||||||||| ||  |||| |||||||||||    
T  36565296 aatttacagggaggaaaaccaaaagtgttttatattacagggaataaagctctattaacc 36565237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 43 - 192
Target Start/End: Original strand, 11102070 - 11102218
Alignment:
Q  43 tcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttaca 142  Q
    |||||||||||||||||||| ||||||||||||    ||| ||| ||||| | |||||||||||||||| |||||| ||||||||||| ||||| |||||    
T  11102070 tcagtgacacatcaaagattatgctgagtcacagtgcatatgggacaatcttgaagaatctttattttaaaaggacggaatctaaaaa-aaaaaattaca 11102168  T
Q  143 gg-gaggaaaatcaaaaatattctatattacatggggtaaaactctattaa 192  Q
    || | |||||| ||||| ||  |||||||||| ||||||||||||||||||    
T  11102169 ggaggggaaaaccaaaagtaccctatattaca-ggggtaaaactctattaa 11102218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 8238086 - 8237990
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    |||||||||||||||| |||||| ||||||||||| ||||  |||||||| | |||| ||||| | ||||||||||||||||||||||| |||||||||    
T  8238086 aagaatctttattttacaaggaccgaatctaaaaaaaaaa--ttacagggggcaaaaccaaaagtgttctatattacatggggtaaaacactattaacc 8237990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 38876965 - 38877077
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaa 181  Q
    ||||| ||||| | |||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||| ||||| |    ||||||||| |||||||    
T  38876965 agggggcaatcttgaagaatctttattttacaaggacggaatctaaaaaaaaaaatttacaggaaggaaaaccaaaagtgccttatattacagggggtaa 38877064  T
Q  182 aactctattaacc 194  Q
    | | |||||||||    
T  38877065 agccctattaacc 38877077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 182
Target Start/End: Original strand, 10355224 - 10355362
Alignment:
Q  42 gtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggac-agaatctaaaaataaaaattta 140  Q
    |||| |||||||||||||||| |||||||||| | |  ||||||| ||||||| |||||||||||||||| |||||| | | | |||||||||||| |||    
T  10355224 gtcaatgacacatcaaagattatgctgagtcatagggcataggggacaatcctgaagaatctttattttacaaggacgaaattttaaaaataaaaaatta 10355323  T
Q  141 cagggaggaaaatcaaaaatattctatattacatggggtaaa 182  Q
    |||   | |||||||||| || |||||| |||| ||||||||    
T  10355324 cag---gaaaaatcaaaagtactctatactacagggggtaaa 10355362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 31551683 - 31551565
Alignment:
Q  40 acgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaattt 139  Q
    ||||||||||||||||||||||| | |||||||||| | ||| |||| |||||||||||||| || ||||||  ||||| ||||||   || ||||||||    
T  31551683 acgtcagtgacacatcaaagattctactgagtcacagggtatggggggcaatcctaaagaattttcattttacgaggacggaatctgggaaaaaaaattt 31551584  T
Q  140 acagggaggaaaatcaaaa 158  Q
    |||| | |||||| |||||    
T  31551583 acagaggggaaaaccaaaa 31551565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 21904070 - 21903961
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatcta-aaaataaaaatttacagggagg 148  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | |||||||||||||||| |||||| ||||||| |||| |||||||||||||| ||    
T  21904070 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatctttattttacaaggacggaatctaaaaaaaaaaaatttacagggggg 21903971  T
Q  149 aaaatcaaaa 158  Q
    |||| |||||    
T  21903970 aaaaccaaaa 21903961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 178
Target Start/End: Complemental strand, 38876135 - 38876006
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatcta-aaaataaaaatttacagggagg 148  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | |||||||||||||||| |||||| ||||||| |||| |||||||||||||| |     
T  38876135 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatctttattttacaaggacggaatctaaaaaaaaaaaatttacaggggga 38876036  T
Q  149 aaaatcaaaaatattctatattacatgggg 178  Q
    |||| ||||| | | |||||||||| ||||    
T  38876035 aaaaccaaaagtgtcctatattacaggggg 38876006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 44368296 - 44368439
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||||||||| |||||||||||  | | |||||| ||||| | ||||||||| ||| || |||||| ||||||||||| ||||| |||||||| | |    
T  44368296 cacatcaaagattctgctgagtcactgggtttagggggcaatcgtgaagaatcttcattatacaaggacggaatctaaaaa-aaaaaattacagggggca 44368394  T
Q  150 aaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
     ||| ||||||   ||||||| || |||||||||  |||||||||    
T  44368395 caataaaaaatgccctatatttcaaggggtaaaaggctattaacc 44368439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 10355163 - 10355073
Alignment:
Q  40 acgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaa 130  Q
    ||||||||||| ||||| | ||| |||||| ||||| | | |||||| ||||||| |||||||||||||| | |||||| |||||||||||    
T  10355163 acgtcagtgacgcatcataaattctgctgaatcacatggtttaggggacaatcctgaagaatctttatttgacaaggacggaatctaaaaa 10355073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 18249776 - 18249683
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagg 144  Q
    ||||||||||||| ||||||||||   |   |||||| ||||| | ||||||||| |||||| |||||||||||||||||| |||||||||||||    
T  18249776 cacatcaaagattctgctgagtcaatgggcttagggggcaatcgtgaagaatcttcattttacaaggacagaatctaaaaa-aaaaatttacagg 18249683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 44367013 - 44366905
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatat-aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagg 148  Q
    ||||||| ||||| |||||||||||| ||  | ||||| ||||| | ||||||||| |||||| |||||| ||||||||||| |||||||||||||| |     
T  44367013 cacatcatagattctgctgagtcaca-gagctcagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaaatttacagggggc 44366915  T
Q  149 aaaatcaaaa 158  Q
    |||| |||||    
T  44366914 aaaaccaaaa 44366905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 1903076 - 1902968
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| |||||| ||||||||||| |||| ||||||||| | |    
T  1903076 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaattttacagggggca 1902977  T
Q  150 aaatcaaaa 158  Q
    ||| |||||    
T  1902976 aaaccaaaa 1902968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 7577696 - 7577796
Alignment:
Q  58 agattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaa 157  Q
    ||||| ||||||||||||||    ||||| ||||| | | ||||||| |||||| |||||| ||||||||||| |||||||||||||| | |||| ||||    
T  7577696 agattctgctgagtcacaaggctcagggggcaatcttgatgaatcttcattttacaaggacggaatctaaaaaaaaaaatttacagggggtaaaaccaaa 7577795  T
Q  158 a 158  Q
    |    
T  7577796 a 7577796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 22293489 - 22293563
Alignment:
Q  83 ggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaa 159  Q
    |||| |||| || |||||||||||||||| |||||| ||||||||||| |||||||||||||| |||||| ||||||    
T  22293489 gggggcaatactgaagaatctttattttacaaggaccgaatctaaaaa-aaaaatttacaggg-ggaaaaacaaaaa 22293563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 5969842 - 5969726
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatcta----aaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggg 177  Q
    ||||| ||||| | |||||||||||||||| |||||| |||||||    |||| |||||||||||||  | |||| ||||| ||  |||||||||| |||    
T  5969842 aggggacaatcattaagaatctttattttacaaggacggaatctaaaaaaaaaaaaaaatttacaggaggcaaaaccaaaagtaccctatattacagggg 5969743  T
Q  178 gtaaaactctattaacc 194  Q
     |||| |||||||||||    
T  5969742 ataaagctctattaacc 5969726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 195
Target Start/End: Complemental strand, 16670613 - 16670499
Alignment:
Q  81 taggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggta 180  Q
    |||||| ||||| | ||||||||| |||||| || ||| ||||||||||| ||||| |||||||| | |||| ||||| |   |||||||||| ||||||    
T  16670613 tagggggcaatcgtgaagaatcttcattttacaatgacggaatctaaaaaaaaaaaattacagggggcaaaaccaaaagtgccctatattacagggggta 16670514  T
Q  181 aaactctattaacct 195  Q
    ||   ||||||||||    
T  16670513 aagacctattaacct 16670499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 39151275 - 39151372
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    |||||||||||||||| |||||||||||||||||| | |  |||||||| || |||| ||||| | |||||||| |  ||||||||||| || ||||||    
T  39151275 aagaatctttattttacaaggacagaatctaaaaaaagacttttacaggaagcaaaaccaaaagtgttctatatca-gtggggtaaaacactgttaacc 39151372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 23834726 - 23834638
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatt 138  Q
    ||||||||||||| ||||||||||   |   |||||| ||||| | ||||||||| |||||| |||||| ||||||||||| |||||||    
T  23834726 cacatcaaagattctgctgagtcaatgggcttaggggacaatcgtgaagaatcttcattttacaaggacggaatctaaaaaaaaaaatt 23834638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 31552050 - 31551910
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| ||||||||||||||    ||||| ||| | | || ||| ||||||||| |||||| ||||||||||| ||||    ||||||||||    
T  31552050 cacatcatagattctgctgagtcacaaggctcagggggcaaacatgaaaaat-tttattttacaaggacggaatctaaaaaaaaaa----acagggagga 31551956  T
Q  150 aaatcaaaaatattctatattac-atggggtaaaactctattaacc 194  Q
    ||| ||||| |  |||||||||| | |||||||| |||||||||||    
T  31551955 aaaccaaaagtgctctatattacaagggggtaaagctctattaacc 31551910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 18250847 - 18250929
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatgggg 178  Q
    ||||||||| |||||| |||||| ||||||||||| ||||| |||||||  | |||| |||||||   |||||||||| ||||    
T  18250847 aagaatcttcattttacaaggacggaatctaaaaaaaaaaaattacaggaggcaaaaccaaaaatgccctatattacaggggg 18250929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 18416618 - 18416663
Alignment:
Q  83 ggggtcaatcctaaagaatctttattttataaggacagaatctaaa 128  Q
    |||| ||||||||||||||||||||||||  ||||| |||||||||    
T  18416618 gggggcaatcctaaagaatctttattttacgaggacggaatctaaa 18416663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 28781914 - 28781995
Alignment:
Q  113 aaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    |||||| | ||| ||||| |||| ||||||| ||| |||| | |||||| ||||||||||| |||||||| | |||||||||    
T  28781914 aaggacgggatccaaaaagaaaattttacagagagaaaaaccgaaaataatctatattacagggggtaaatcactattaacc 28781995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 32596474 - 32596418
Alignment:
Q  126 aaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaa 182  Q
    |||||||||| |||||||||||||||| | ||||||  |||||||||| ||| ||||    
T  32596474 aaaaataaaattttacagggaggaaaaccgaaaataacctatattacaggggataaa 32596418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 38813721 - 38813641
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaa 130  Q
    ||||||| ||||| |||||||||||| |   |||||| ||||| | |||||| || |||||| |||||| |||||||||||    
T  38813721 cacatcatagattctgctgagtcacagggcttagggggcaatcttgaagaatattcattttacaaggacggaatctaaaaa 38813641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 194
Target Start/End: Original strand, 6000567 - 6000727
Alignment:
Q  35 atgcaacgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatct--aaaaata 132  Q
    |||| ||||||||||||||||||||||| |||||||||||| |  ||||||| ||||||| |||||||||||||||| |||||  ||||||  | ||| |    
T  6000567 atgccacgtcagtgacacatcaaagattctgctgagtcacagggcatagggggcaatcctgaagaatctttattttacaaggatggaatctgaagaaaaa 6000666  T
Q  133 aaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    |||| |||||||| |||||| ||||| |  ||||||||||| |||||||| |||||||||||    
T  6000667 aaaaattacaggg-ggaaaaccaaaagtgctctatattacagggggtaaagctctattaacc 6000727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 178
Target Start/End: Complemental strand, 24914584 - 24914456
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| ||  |||||| ||||| | ||||||||| |||||| |||||| ||||||||||| ||||| |||||||| | |    
T  24914584 cacatcatagattctgctgagtcacaggacttagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaaaattacagggggca 24914485  T
Q  150 aaatcaaaaatattctatattacatgggg 178  Q
    ||||||||| | | |||||||||| ||||    
T  24914484 aaatcaaaagtgtcctatattacaggggg 24914456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 33485019 - 33485132
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattaca-tggggta 180  Q
    ||||| ||||||| |||||||||||||||| |||||| |||| | |||| |||||||||||||| | |||| ||||| ||  ||||||||||  ||||||    
T  33485019 agggggcaatcctgaagaatctttattttacaaggacggaattttaaaaaaaaaatttacagggggcaaaaccaaaagtaccctatattacaggggggta 33485118  T
Q  181 aaactctattaacc 194  Q
    || |||| ||||||    
T  33485119 aagctctgttaacc 33485132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 24235542 - 24235650
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| ||||||||||||||||||||||  ||||||||| | |    
T  24235542 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacagaatctaaaaataaatttttacagggggca 24235641  T
Q  150 aaatcaaaa 158  Q
    ||| |||||    
T  24235642 aaaccaaaa 24235650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 158
Target Start/End: Original strand, 12322710 - 12322822
Alignment:
Q  45 agtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagg 144  Q
    |||| ||||||||||||| ||||||||||   |   |||||| ||||| | ||||||||| |||||| |||||| ||||||||||| ||||| |||||||    
T  12322710 agtgccacatcaaagattctgctgagtcaatgggcttagggggcaatcgtgaagaatcttcattttacaaggacggaatctaaaaa-aaaaaattacagg 12322808  T
Q  145 gaggaaaatcaaaa 158  Q
    | | ||||||||||    
T  12322809 gggcaaaatcaaaa 12322822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 22056628 - 22056520
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatat-aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagg 148  Q
    ||||||| ||||| |||||||||||| ||  | ||||| ||||| | ||||||||| |||||| |||||| ||||||||||| |||||||||||||| |     
T  22056628 cacatcatagattctgctgagtcaca-gagctcagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaaatttacagggggc 22056530  T
Q  149 aaaatcaaaa 158  Q
    |||| |||||    
T  22056529 aaaaccaaaa 22056520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 182
Target Start/End: Original strand, 56024 - 56156
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||||||||| ||||||||||   |   |||||| ||||| | ||||||||| |||||| || ||| ||||||||||| ||||| ||||||||   |    
T  56024 cacatcaaagattctgctgagtcaatgggcttagggggcaatcgtgaagaatcttcattttacaacgacggaatctaaaaaaaaaaaattacaggggaca 56123  T
Q  150 aaatcaaaaatattctatattacatggggtaaa 182  Q
    ||||||||| |   |||||||||| ||||||||    
T  56124 aaatcaaaagtgccctatattacagggggtaaa 56156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 6917700 - 6917792
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttaca 142  Q
    ||||||| ||||| |||||| ||| | ||||||||||  |||| | |||||||| ||||||| || ||  ||||||||||| |||||||||||    
T  6917700 cacatcagagattctgctgactcaaatgatataggggataatcgtgaagaatctatattttaaaaagatcgaatctaaaaaaaaaaatttaca 6917792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 11424872 - 11424792
Alignment:
Q  81 taggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaata 161  Q
    |||||| ||||||| |||||||||||||||| |||||  |||| |||||| || | |||||||| |  |||||||||||||    
T  11424872 taggggacaatcctgaagaatctttattttacaaggatggaatttaaaaaaaatattttacaggaatcaaaatcaaaaata 11424792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 22058236 - 22058298
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaa 158  Q
    ||||||||| |||||| |||||| ||||||||||| || ||||||||||| | |||| |||||    
T  22058236 aagaatcttcattttacaaggacggaatctaaaaaaaagaatttacagggggcaaaaccaaaa 22058298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 34762281 - 34762219
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaa 158  Q
    ||||||||| |||||| ||||||  |||||| ||| |||||||||||||||| |||| |||||    
T  34762281 aagaatcttcattttacaaggacgaaatctataaaaaaaaatttacagggagcaaaaccaaaa 34762219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 2011216 - 2011113
Alignment:
Q  35 atgcaacgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaa 134  Q
    |||| ||||||||||||||||||| ||| ||||||||||||||  |||| || ||||||| |||||||||||||||| |||||||||||||||||| |||    
T  2011216 atgccacgtcagtgacacatcaaatattctgctgagtcacaaggcatagagggcaatcctgaagaatctttattttacaaggacagaatctaaaaaaaaa 2011117  T
Q  135 aatt 138  Q
    ||||    
T  2011116 aatt 2011113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 35 - 195
Target Start/End: Original strand, 2011857 - 2012016
Alignment:
Q  35 atgcaacgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaa 134  Q
    |||| ||||||||| ||||||| ||||| |||||||||| | | |  ||||| ||||||| |||||||||||||||| ||||| |||||||||||| |||    
T  2011857 atgccacgtcagtgtcacatcatagattctgctgagtcatagggttcaggggacaatcctgaagaatctttattttacaaggatagaatctaaaaaaaaa 2011956  T
Q  135 aatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacct 195  Q
    || |||||||| |||||| |||||||    ||||||| | ||| |||||||||||||||||    
T  2011957 aaattacaggg-ggaaaaccaaaaatgccatatattataggggataaaactctattaacct 2012016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 28208057 - 28208201
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| ||   ||||| ||||| | |||||||||||||||| |||||| ||||||||||| ||||| |||||||| |||    
T  28208057 cacatcatagattctgctgagtcacaggactcagggggcaatcttgaagaatctttattttacaaggacggaatctaaaaaaaaaaaattacaggg-gga 28208155  T
Q  150 aaatcaaaaatattctatattaca-tggggtaaaactctattaacc 194  Q
    ||| ||||| |   ||||||||||  |||||||| |||||||||||    
T  28208156 aaaccaaaagtgccctatattacaggggggtaaagctctattaacc 28208201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 15093657 - 15093770
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatct-aaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggta 180  Q
    ||||| ||||||| |||||||||||||||| |||||  |||||| ||||| |||||||||||||| | |||||||||| ||  |||||||| | ||||||    
T  15093657 agggggcaatcctgaagaatctttattttacaaggatggaatctaaaaaaaaaaaatttacagggggcaaaatcaaaagtaccctatattatagggggta 15093756  T
Q  181 aaactctattaacc 194  Q
    ||  ||||||||||    
T  15093757 aagttctattaacc 15093770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 182
Target Start/End: Complemental strand, 10615420 - 10615288
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| |||||| ||||||||||| |||||||||||||| | |    
T  10615420 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaaatttacagggggca 10615321  T
Q  150 aaatcaaaaatattctatattacatggggtaaa 182  Q
    ||| ||||| |   |||||||||| ||||||||    
T  10615320 aaaccaaaagtgccctatattacagggggtaaa 10615288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 194
Target Start/End: Original strand, 52396349 - 52396499
Alignment:
Q  40 acgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaattt 139  Q
    |||| ||||| ||||||||||||||||||||||||| |  ||| ||| ||||| | ||||||||||||||||||||||    ||||||||  ||||||||    
T  52396349 acgttagtgatacatcaaagattttgctgagtcacagggcataaggggcaatcttgaagaatctttattttataaggatgacatctaaaa--aaaaattt 52396446  T
Q  140 acagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    | |||  |||||| || || |  ||||||||||| |||||||| | |||||||||    
T  52396447 atagg--ggaaaaccagaagtgctctatattacagggggtaaagccctattaacc 52396499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 37976076 - 37975970
Alignment:
Q  88 caatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattaca-tggggtaaaactc 186  Q
    |||||||  ||||||||||||||| |||||| ||||||||||| ||||||||| |||| | |||| ||||| ||  ||||||||||  ||||||||||||    
T  37976076 caatcctggagaatctttattttacaaggacggaatctaaaaa-aaaaatttatagggggcaaaaccaaaagtaccctatattacaggggggtaaaactc 37975978  T
Q  187 tattaacc 194  Q
    ||||||||    
T  37975977 tattaacc 37975970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 43930067 - 43929957
Alignment:
Q  35 atgcaacgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaa 134  Q
    |||| ||||||||||||||||||||||| |||||||||||||   ||||||| || || | || ||||||||||||| ||||||  |||||| ||| |||    
T  43930067 atgccacgtcagtgacacatcaaagattctgctgagtcacaatgcatagggggcattcttgaataatctttattttacaaggacgaaatctataaaaaaa 43929968  T
Q  135 aatttacaggg 145  Q
    |  ||||||||    
T  43929967 atattacaggg 43929957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 18705067 - 18704954
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattac-atggggta 180  Q
    ||||| ||||||| |||||||||||||| | |||||  ||||||||||| |||||||||||||| |||||| ||||| |   |||||||||   ||||||    
T  18705067 agggggcaatcctgaagaatctttatttgacaaggaaggaatctaaaaaaaaaaatttacaggggggaaaaccaaaagtgccctatattactggggggta 18704968  T
Q  181 aaactctattaacc 194  Q
    || |||||||||||    
T  18704967 aagctctattaacc 18704954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 14824850 - 14824751
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggg-gtaaaactctattaacc 194  Q
    |||||||||||||||| |||||| ||||||||||| || | ||||||||| | |||||||||| |   |||||||||| ||| ||||| | |||||||||    
T  14824850 aagaatctttattttacaaggacggaatctaaaaaaaatattttacagggggcaaaatcaaaagtgacctatattacaggggcgtaaagcactattaacc 14824751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 14826033 - 14826131
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    |||||||||||||||| |||||| ||||||||||| || | ||||||||| | |||| ||||| |     |||||||| |||||||||| |||||||||    
T  14826033 aagaatctttattttacaaggacggaatctaaaaaaaatattttacagggggcaaaaccaaaagtgacaaatattacagggggtaaaacactattaacc 14826131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 22257285 - 22257331
Alignment:
Q  89 aatcctaaagaatctttattttataaggacagaatctaaaaataaaa 135  Q
    |||||| |||||||||||||||| |||||||||||||||||| ||||    
T  22257285 aatcctgaagaatctttattttacaaggacagaatctaaaaaaaaaa 22257331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 46610108 - 46610022
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaa 182  Q
    ||||||||| |||||| |||||| ||||||||||| ||||| |||||||| | |||| ||||| |   |||||||||| ||||||||    
T  46610108 aagaatcttcattttacaaggacggaatctaaaaaaaaaaaattacagggggcaaaaccaaaagtgccctatattacagggggtaaa 46610022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 3207511 - 3207559
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaatttacaggg 145  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||||||    
T  3207511 aagaatctttattttacaagggcagaatctaaaaa-aaaaatttacaggg 3207559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 43930712 - 43930855
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| ||||||||||||  |   ||||| ||||| | |||||||||||||||| |||||  ||||||||||| ||||| |||||||| |||    
T  43930712 cacatcatagattctgctgagtcacagaactgagggggcaatcttgaagaatctttattttacaaggatggaatctaaaaa-aaaaaattacaggg-gga 43930809  T
Q  150 aaatcaaaaatattctatattacatgggg-taaaactctattaacc 194  Q
     || ||||| | |  ||||||||| |||| |||| |||||||||||    
T  43930810 gaaccaaaagtgtcatatattacaaggggataaagctctattaacc 43930855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 3188281 - 3188233
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaatttacagg 144  Q
    ||||||||||||||||||||||| |||| |||||| ||||| |||||||    
T  3188281 aagaatctttattttataaggacggaatataaaaaaaaaaaattacagg 3188233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 194
Target Start/End: Original strand, 27318978 - 27319139
Alignment:
Q  35 atgcaacgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaata-- 132  Q
    |||| |||||||||||| ||||||||||||||||||||| | |  |||  || ||| | | |||| |||||| |||| |||||||||||||||||| |      
T  27318978 atgccacgtcagtgacaaatcaaagattttgctgagtcagagggcataatgg-caaacttgaagagtctttactttacaaggacagaatctaaaaaaaaa 27319076  T
Q  133 -aaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
     ||||||||||| | | |||| ||||| |  | |||||||||   |||||| |||||||||||    
T  27319077 gaaaatttacagtgggaaaaaccaaaagtgctatatattacagaaggtaaagctctattaacc 27319139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 52395640 - 52395543
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    |||||||||||||||| |||||   |||||||||| |||||  |||||  || |||||||||| ||  ||||||||||  |||||||||||| ||||||    
T  52395640 aagaatctttattttacaaggatgaaatctaaaaaaaaaaaaatacagt-agaaaaatcaaaagtacactatattacagtgggtaaaactctgttaacc 52395543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 12071616 - 12071571
Alignment:
Q  94 taaagaatctttattttataaggacagaatctaaaaataaaaattt 139  Q
    |||||||||||||||||| |||||| ||||||||||| ||| ||||    
T  12071616 taaagaatctttattttacaaggacggaatctaaaaaaaaatattt 12071571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 20123859 - 20123916
Alignment:
Q  137 tttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    ||||||||||||||||| ||||||   |||||||||| |||||||||| | |||||||    
T  20123859 tttacagggaggaaaataaaaaatgacctatattacagggggtaaaacaccattaacc 20123916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 31835801 - 31835885
Alignment:
Q  98 gaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaa 182  Q
    |||||||||||||| || |||  |||||||||| || || |||||||| | |||||||||| | |  ||||||||| ||||||||    
T  31835801 gaatctttattttacaacgacgaaatctaaaaaaaataaattacagggggcaaaatcaaaagtgtcatatattacagggggtaaa 31835885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 33898260 - 33898316
Alignment:
Q  126 aaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaa 182  Q
    ||||| ||||||||||| || |||||| ||||||||  |||||||||| ||||||||    
T  33898260 aaaaaaaaaaatttacaagggggaaaaccaaaaataacctatattacagggggtaaa 33898316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 38344349 - 38344401
Alignment:
Q  106 attttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaa 158  Q
    |||||| |||||| ||||| ||||| |||||||||||||| | ||||||||||    
T  38344349 attttacaaggaccgaatccaaaaaaaaaaatttacagggggcaaaatcaaaa 38344401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 38842222 - 38842186
Alignment:
Q  91 tcctaaagaatctttattttataaggacagaatctaa 127  Q
    |||| |||||||||||||||| |||||||||||||||    
T  38842222 tcctgaagaatctttattttacaaggacagaatctaa 38842186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 46207202 - 46207150
Alignment:
Q  106 attttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaa 158  Q
    |||||| |||||| |||||| | || ||||||||| |||||||||||||||||    
T  46207202 attttacaaggacggaatctgagaaaaaaaatttatagggaggaaaatcaaaa 46207150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 51116310 - 51116263
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaatttacagg 144  Q
    |||||||||||||||| |||||| ||||||||||| ||| |||||||||    
T  51116310 aagaatctttattttacaaggactgaatctaaaaa-aaatatttacagg 51116263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 1831892 - 1832035
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| |   |||||| ||||| | |||||||||||||||| ||||| |||||||||||| |||||||||||||| |||    
T  1831892 cacatcatagattctgctgagtcacagggcttagggggcaatcttgaagaatctttattttacaaggatagaatctaaaaaaaaaaatttacaggg-gga 1831990  T
Q  150 aaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    ||||||||| |   |||||||||| |||||||| | |||||||||    
T  1831991 aaatcaaaagtgccctatattacagggggtaaagccctattaacc 1832035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 1830911 - 1830813
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    |||||||||||||||| || ||| ||||||||||| ||||||||||| || |||||||||||| ||| |||||||||| |||||||| | |||||||||    
T  1830911 aagaatctttattttacaaagacggaatctaaaaaaaaaaatttacaagggggaaaatcaaaagtatcctatattacagggggtaaagccctattaacc 1830813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 13771716 - 13771618
Alignment:
Q  40 acgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatt 138  Q
    ||||||||||||||||||||||| |||||||||| |    ||| ||| ||||| | |||||||||||||||||||| ||  |||||||||| |||||||    
T  13771716 acgtcagtgacacatcaaagattctgctgagtcatagtgcatatggggcaatcttgaagaatctttattttataagaacgaaatctaaaaaaaaaaatt 13771618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 173
Target Start/End: Complemental strand, 17763482 - 17763359
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| |||||| ||||||||||| |||| ||||||||| | |    
T  17763482 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaattttacagggggca 17763383  T
Q  150 aaatcaaaaatattctatattaca 173  Q
    ||| ||||| | | ||||||||||    
T  17763382 aaaccaaaagtgtcctatattaca 17763359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 48170173 - 48170282
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatct-aaaaataaaaatttacagggagg 148  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| |||||| |||||| ||||| |||||||||||||| |     
T  48170173 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaaaatttacagggggc 48170272  T
Q  149 aaaatcaaaa 158  Q
    |||| |||||    
T  48170273 aaaaccaaaa 48170282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 24436329 - 24436385
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatt 138  Q
    ||||| ||||||| | |||||||||||||| |||||| ||||||||||| |||||||    
T  24436329 agggggcaatcctgaggaatctttattttacaaggacggaatctaaaaaaaaaaatt 24436385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 47637829 - 47637753
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaa 158  Q
    ||||| ||||| | |||||||||||||||| ||||| | ||||||||||||| | ||||||||  | ||||||||||    
T  47637829 agggggcaatcatgaagaatctttattttacaaggatataatctaaaaataatattttacaggaggtaaaatcaaaa 47637753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 31433583 - 31433646
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacaggg 145  Q
    ||||||||||||| ||||||||| |||||  ||||   ||||||||||| ||||||||||||||    
T  31433583 aggggtcaatcctgaagaatcttcatttttcaagggtggaatctaaaaaaaaaaatttacaggg 31433646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 9553515 - 9553413
Alignment:
Q  81 taggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaa-aatttacagggaggaaaatcaaaaatattctatattacatggggt 179  Q
    |||||| ||||| | ||||||||| |||||| |||||| ||||||||||| ||| ||||||||||  | |||| ||||| |   |||||||||| |||||    
T  9553515 tagggggcaatcgtgaagaatcttcattttacaaggacggaatctaaaaaaaaataatttacaggaggcaaaaccaaaagtgccctatattacagggggt 9553416  T
Q  180 aaa 182  Q
    |||    
T  9553415 aaa 9553413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 22718512 - 22718615
Alignment:
Q  89 aatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactcta 188  Q
    |||||| |||||||||||||||| |||||   ||||| |||| || | ||||||||| | |||||||||| | | |  ||||||| |||||||||| |||    
T  22718512 aatcctgaagaatctttattttacaaggatgaaatcttaaaaaaatattttacagggtgtaaaatcaaaagtgtcc--tattacaaggggtaaaacacta 22718609  T
Q  189 ttaacc 194  Q
    ||||||    
T  22718610 ttaacc 22718615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 31927726 - 31927676
Alignment:
Q  108 tttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaa 158  Q
    |||| |||||| |||||| | || |||||||||||||||||||||||||||    
T  31927726 tttacaaggacggaatcttataaaaaaaatttacagggaggaaaatcaaaa 31927676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 32200073 - 32200134
Alignment:
Q  133 aaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    |||||||| |||||||||||||| ||||   |||||||||| |||||||||| || ||||||    
T  32200073 aaaatttagagggaggaaaatcagaaatgacctatattacagggggtaaaacactgttaacc 32200134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 8175917 - 8176027
Alignment:
Q  88 caatcctaaagaatctttattttataaggacagaatct---aaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggg-gtaaaa 183  Q
    ||||||| |||||||  ||||||| |||||| ||||||   ||||| ||||| |||||||| | |||| ||||| ||   ||||||||| ||| ||||||    
T  8175917 caatcctgaagaatcactattttacaaggacggaatctaaaaaaaaaaaaaaattacagggggcaaaaccaaaagtaccttatattacaggggagtaaaa 8176016  T
Q  184 ctctattaacc 194  Q
    |||||||||||    
T  8176017 ctctattaacc 8176027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 17764611 - 17764691
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaa 130  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| |||||| |||||||||||    
T  17764611 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaa 17764691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 25274773 - 25274709
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatcta-aaaataaaaatttacaggg 145  Q
    ||||||||||||| |||||||||||||||  ||||   ||||||| |||| ||||||||||||||    
T  25274773 aggggtcaatcctgaagaatctttatttttcaagggtggaatctaaaaaaaaaaaatttacaggg 25274709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 37413832 - 37413768
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacaggga 146  Q
    ||||||||||||| ||||||||| |||||  |||||  ||||||||||| | ||| |||||||||    
T  37413832 aggggtcaatcctgaagaatcttcatttttcaaggatggaatctaaaaaaataaaattacaggga 37413768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 11438452 - 11438340
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaa 181  Q
    ||||| ||||||| |||||||||||||||| | |||| ||||||||||| |||||||||||||||| |||| ||||| ||  |||||||||| |||||||    
T  11438452 aggggacaatcctgaagaatctttattttacatggacggaatctaaaaaaaaaaatttacagggagcaaaaccaaaagtaccctatattacagggggtaa 11438353  T
Q  182 aactctattaacc 194  Q
    | |||||||||||    
T  11438352 agctctattaacc 11438340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 194
Target Start/End: Complemental strand, 37274883 - 37274749
Alignment:
Q  58 agattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaa 157  Q
    ||||| |||||||||| | ||  |||||| ||||||| |||||||||||||||| |||||| |||||  |||| ||||| |||||||| | |||| ||||    
T  37274883 agattctgctgagtcataggagttagggggcaatcctgaagaatctttattttacaaggacggaatc--aaaaaaaaaaattacagggggcaaaaccaaa 37274786  T
Q  158 aatattctatattacatggggtaaaactctattaacc 194  Q
    | ||  |||||||| | |||||||| |||||||||||    
T  37274785 agtaccctatattatagggggtaaagctctattaacc 37274749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 21776818 - 21776926
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| |   |||||| ||||| | ||||||||| |||||| |||||| ||||||||||| |||||||||||||| | |    
T  21776818 cacatcatagattctgctgagtcacagggcttagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaaatttacagggggca 21776917  T
Q  150 aaatcaaaa 158  Q
    ||| |||||    
T  21776918 aaaccaaaa 21776926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 30798490 - 30798596
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| |||||| ||||||||||| ||||| |||||||| | |    
T  30798490 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaaaattacagggggca 30798589  T
Q  150 aaatcaa 156  Q
    |||||||    
T  30798590 aaatcaa 30798596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 178
Target Start/End: Complemental strand, 15060309 - 15060181
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| |||||| ||||||||||| |||  ||||||||| | |    
T  15060309 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaatttttacagggggca 15060210  T
Q  150 aaatcaaaaatattctatattacatgggg 178  Q
    ||| ||||| | | |||||||||| ||||    
T  15060209 aaaccaaaagtgtcctatattacaggggg 15060181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 33751031 - 33750919
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaa 181  Q
    ||||| ||||||| |||||||||||||||| |||||| |||||||| || ||||| |||  ||    |||||||||| |  ||||||||||| ||| |||    
T  33751031 agggggcaatcctgaagaatctttattttacaaggacggaatctaagaaaaaaaaattattggagacaaaatcaaaagtgctctatattacaagggttaa 33750932  T
Q  182 aactctattaacc 194  Q
    ||| |||||||||    
T  33750931 aacactattaacc 33750919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 11956285 - 11956190
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacaggg 145  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| |||||| ||||||||||| |||| |||||||||    
T  11956285 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaattttacaggg 11956190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 4060541 - 4060460
Alignment:
Q  113 aaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    |||||| ||||||||||| ||||||||||| || | |||| ||| | || ||||||||| | |||||||| |||||||||||    
T  4060541 aaggacggaatctaaaaaaaaaaatttacaaggggcaaaaccaagagtactctatattagagggggtaaagctctattaacc 4060460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 33847224 - 33847179
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaa 127  Q
    ||||| ||||||| |||||||||||||||| |||||||||||||||    
T  33847224 agggggcaatcctgaagaatctttattttacaaggacagaatctaa 33847179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 30796724 - 30796632
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttaca 142  Q
    ||||||| ||||| |||||||||||| |    ||||  ||||| | ||||||||| |||||| |||||| ||||||||||| |||||||||||    
T  30796724 cacatcatagattctgctgagtcacagggctcagggtgcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaaatttaca 30796632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 41064258 - 41064182
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaa 158  Q
    ||||| ||||| | ||||||||| |||||| |||||| ||||||||||| |||| ||||||||| | |||| |||||    
T  41064258 agggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaattttacagggggcaaaaccaaaa 41064182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 41065568 - 41065663
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacaggg 145  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| |||||  ||||||||||| |||| |||||||||    
T  41065568 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggaaggaatctaaaaaaaaaattttacaggg 41065663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 4061429 - 4061499
Alignment:
Q  58 agattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaa 128  Q
    |||||||||||||||| |||    ||||| ||||||| |||||||||||||||| ||||||  ||||||||    
T  4061429 agattttgctgagtcataagggtcaggggacaatcctgaagaatctttattttacaaggacgaaatctaaa 4061499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 16095689 - 16095754
Alignment:
Q  93 ctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaa 158  Q
    ||||||||||||||||||| || |||  |||||||||| |||  ||||||||| | ||||||||||    
T  16095689 ctaaagaatctttattttacaaagacgaaatctaaaaaaaaatttttacagggggcaaaatcaaaa 16095754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 194
Target Start/End: Original strand, 40434313 - 40434461
Alignment:
Q  45 agtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagg 144  Q
    |||| ||||||||||||| ||||||||||   |   |||||| ||||  | |||||| || |||||| |||||| ||||||||||| ||||  ||||| |    
T  40434313 agtgccacatcaaagattctgctgagtcaatgggcttagggggcaattgtgaagaat-ttcattttacaaggacggaatctaaaaaaaaaatattacatg 40434411  T
Q  145 gaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    ||| |||| ||||| |||  |||||||||  |||||||  ||||||||||    
T  40434412 gagcaaaaccaaaagtatcttatattacagagggtaaatgtctattaacc 40434461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 9751645 - 9751732
Alignment:
Q  106 attttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    |||||| |||||| ||||| ||||| |||||||||||||| | |||| ||||| |   |||||||||| |||||||||  |||||||||    
T  9751645 attttacaaggaccgaatcaaaaaa-aaaaatttacagggggcaaaaccaaaagtgacctatattacagggggtaaaagcctattaacc 9751732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 11957592 - 11957668
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaa 158  Q
    ||||| ||||| | ||||||| | |||||| |||||| ||||||||||| |||| ||||||||| | |||| |||||    
T  11957592 agggggcaatcttgaagaatcgtcattttacaaggacggaatctaaaaaaaaaattttacagggggcaaaaccaaaa 11957668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 182
Target Start/End: Complemental strand, 15615248 - 15615116
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| | |||| |||||| ||||||||||| |||| ||||| |||   |    
T  15615248 cacatcatagattctgctgagtcacatggctcagggggcaatcttgaagaatcttcaatttacaaggacggaatctaaaaaaaaaattttaccggggaca 15615149  T
Q  150 aaatcaaaaatattctatattacatggggtaaa 182  Q
    ||| ||||| |   |||||||||| ||||||||    
T  15615148 aaaccaaaagtgccctatattacagggggtaaa 15615116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 24801999 - 24802066
Alignment:
Q  126 aaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    ||||| |||||||||||||| ||||||  ||||||   |||||||||| |||||||||| |||||||||    
T  24801999 aaaaaaaaaaatttacaggggggaaaacaaaaaatgacctatattaca-ggggtaaaacactattaacc 24802066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 39419643 - 39419687
Alignment:
Q  97 agaatctttattttataaggacagaatctaaaaataaaaatttac 141  Q
    ||||||||||||||| |||||| ||||||||| | ||||||||||    
T  39419643 agaatctttattttacaaggacggaatctaaacaaaaaaatttac 39419687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 40434099 - 40434055
Alignment:
Q  83 ggggtcaatcctaaagaatctttattttataaggacagaatctaa 127  Q
    |||| ||||||| |||||||||||||||| |||||| ||||||||    
T  40434099 gggggcaatcctgaagaatctttattttacaaggacggaatctaa 40434055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 40765466 - 40765407
Alignment:
Q  113 aaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattaca 173  Q
    |||||| |||||||||||||||| |||||| |||| |||| | ||||||| ||||||||||    
T  40765466 aaggacggaatctaaaaataaaattttaca-ggagaaaaaccgaaaatatcctatattaca 40765407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 35 - 182
Target Start/End: Original strand, 28561916 - 28562063
Alignment:
Q  35 atgcaacgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaa 134  Q
    |||| |||| |||||||||||||||||| ||||||||||||    ||||| | ||||| | |||||||||||||||| |||||| ||||||||||| | |    
T  28561916 atgccacgttagtgacacatcaaagattctgctgagtcacagtgcataggtgacaatcttgaagaatctttattttacaaggacggaatctaaaaaaata 28562015  T
Q  135 aatttacagggaggaaaatcaaaaatattctatattacatggggtaaa 182  Q
    || ||||| || |||||||||||| |  ||||||||||| ||| ||||    
T  28562016 aaattacaagggggaaaatcaaaagtgctctatattacaggggttaaa 28562063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 35 - 182
Target Start/End: Original strand, 28567414 - 28567561
Alignment:
Q  35 atgcaacgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaa 134  Q
    |||| |||| |||||||||||||||||| ||||||||||||    ||||| | ||||| | |||||||||||||||| |||||| ||||||||||| | |    
T  28567414 atgccacgttagtgacacatcaaagattctgctgagtcacagtgcataggtgacaatcttgaagaatctttattttacaaggacggaatctaaaaaaata 28567513  T
Q  135 aatttacagggaggaaaatcaaaaatattctatattacatggggtaaa 182  Q
    || ||||| || |||||||||||| |  ||||||||||| ||| ||||    
T  28567514 aaattacaagggggaaaatcaaaagtgctctatattacaggggttaaa 28567561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 28575014 - 28575131
Alignment:
Q  40 acgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaattt 139  Q
    |||||||||||| |||||||||| ||||||||||||    |||| || ||||| | |||||||||||||||||||||||  |||||||||| ||||||||    
T  28575014 acgtcagtgacatatcaaagattctgctgagtcacagtgcatagtgggcaatcttgaagaatctttattttataaggacgaaatctaaaaaaaaaaattt 28575113  T
Q  140 acagggaggaaaatcaaaa 158  Q
     ||||| |||||| |||||    
T  28575114 gcaggg-ggaaaaccaaaa 28575131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 42350135 - 42350217
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatgggg 178  Q
    ||||||||| |||||| |||||| ||||||||||| |||||||||||||| | |||| |||||||  ||||||||||| ||||    
T  42350135 aagaatcttcattttacaaggacggaatctaaaaaaaaaaatttacagggggcaaaaccaaaaatgctctatattacaggggg 42350217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 6105669 - 6105556
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaata-aaaatttacagggaggaaaatcaaaaatattctatattacatggggta 180  Q
    ||||| ||||||| |||||||||||||||| ||| || ||||||||||| | | | ||||||||||| |||| ||||| | | ||||||| || ||||||    
T  6105669 agggggcaatcctgaagaatctttattttacaagtacggaatctaaaaaaatatattttacagggagcaaaaccaaaagtgtcctatattgcacggggta 6105570  T
Q  181 aaactctattaacc 194  Q
    |||| |||||||||    
T  6105569 aaacactattaacc 6105556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 1602810 - 1602953
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||||||||| |||||||||||  | | |||||| ||||| | ||||||||| ||| || |||||| ||||||||||| ||||| |||||||| | |    
T  1602810 cacatcaaagattctgctgagtcactgggtttagggggcaatcgtgaagaatcttcattatacaaggacggaatctaaaaa-aaaaaattacagggggca 1602908  T
Q  150 aaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
     ||| ||||||   ||||||| || |||||||||  |||||||||    
T  1602909 caataaaaaatgccctatatttcaaggggtaaaaggctattaacc 1602953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 28574684 - 28574544
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| | |  ||||| ||||| | |||||||||||||||| |||||| ||||||||||  ||||| |||||||| |||    
T  28574684 cacatcatagattctgctgagtcacagggttcagggggcaatcttgaagaatctttattttaaaaggacggaatctaaaa--aaaaaattacaggg-gga 28574588  T
Q  150 aaatcaaaaatattctatattac-atggggtaaaactctattaa 192  Q
    ||| ||||| | |  |||||||| | |||||||| |||||||||    
T  28574587 aaaccaaaagtgtcatatattacaagggggtaaagctctattaa 28574544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 171
Target Start/End: Original strand, 1601165 - 1601286
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaa-atttacagggagg 148  Q
    ||||||||||||| |||||||||||  |   |||||| ||||| | ||||||||| |||||| |||||| ||||||||||| |||| |||||||||| |     
T  1601165 cacatcaaagattctgctgagtcactgggcttagggggcaatcgtgaagaatcttcattttacaaggacggaatctaaaaaaaaaatatttacaggg-gc 1601263  T
Q  149 aaaatcaaaaatattctatatta 171  Q
    |||||||||| | | ||||||||    
T  1601264 aaaatcaaaagtgtcctatatta 1601286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 27164602 - 27164715
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaa 181  Q
    ||||| ||||| | ||||||||| |||||| |||||| ||||||||||| |||| ||||||||| | |||| ||||| |   |||||||||| |||||||    
T  27164602 agggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaattttacagggggcaaaaccaaaagtgccctatattacagggggtaa 27164701  T
Q  182 aactctattaacct 195  Q
    |   ||||||||||    
T  27164702 agacctattaacct 27164715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 28561533 - 28561434
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaa-tttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    ||||||| |||||||| |||||||||||||||||| ||| | ||||||||| |||||  ||||| |   |||||||||| |||||||| |||||||||||    
T  28561533 aagaatccttattttacaaggacagaatctaaaaaaaaatactttacaggggggaaac-caaaagtgccctatattacagggggtaaagctctattaacc 28561435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 28567031 - 28566932
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaa-tttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    ||||||| |||||||| |||||||||||||||||| ||| | ||||||||| |||||  ||||| |   |||||||||| |||||||| |||||||||||    
T  28567031 aagaatccttattttacaaggacagaatctaaaaaaaaatactttacaggggggaaac-caaaagtgccctatattacagggggtaaagctctattaacc 28566933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 39809998 - 39810106
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| |||||| ||||||||||| || ||||||||||| | |    
T  39809998 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaataatttacagggggca 39810097  T
Q  150 aaatcaaaa 158  Q
    ||| |||||    
T  39810098 aaaccaaaa 39810106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 5703213 - 5703106
Alignment:
Q  35 atgcaacgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaa 134  Q
    |||| |||||| | |||||  ||||||| | ||||||||||    ||||||| ||||| | |||||||||||||||| ||||||  |||||||||| |||    
T  5703213 atgccacgtcaataacacaataaagattcttctgagtcacagtgcataggggacaatcttgaagaatctttattttacaaggacgaaatctaaaaaaaaa 5703114  T
Q  135 aatttaca 142  Q
    ||||||||    
T  5703113 aatttaca 5703106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 3252277 - 3252215
Alignment:
Q  81 taggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacaggg 145  Q
    |||||| ||||| | ||||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  3252277 tagggggcaatcgtgaagaatctttattttataaggacggaatct--aaataaaaaattacaggg 3252215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 42349106 - 42349018
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatt 138  Q
    ||||||| ||||| |||||||||||| | |  ||||| ||||| | ||||||||| |||||| |||||| |||| |||||| |||||||    
T  42349106 cacatcatagattctgctgagtcacagggttcaggggacaatcttgaagaatcttcattttacaaggacggaatttaaaaagaaaaatt 42349018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 39808793 - 39808715
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaa 128  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| ||||||||||||||||    
T  39808793 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacagaatctaaa 39808715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 6820051 - 6820091
Alignment:
Q  107 ttttataaggacagaatctaaaaataaaaatttacagggag 147  Q
    ||||| |||||| ||||||||||| ||||||||||||||||    
T  6820051 ttttaaaaggacggaatctaaaaaaaaaaatttacagggag 6820091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 27163262 - 27163182
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaa 130  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| |||||| |||||||||||    
T  27163262 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaa 27163182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 11512 - 11625
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattaca-tggggta 180  Q
    ||||| ||||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||| | |||| ||||| || | |||||||||  ||||||    
T  11512 agggggcaatcctgaagaatctttattttacaaggacggaatctaaaaaaaaaaatttacagggggcaaaaccaaaagtactatatattacaggggggta 11611  T
Q  181 aaactctattaacc 194  Q
    || |||||||||||    
T  11612 aagctctattaacc 11625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 178
Target Start/End: Complemental strand, 5561032 - 5560891
Alignment:
Q  35 atgcaacgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaa 134  Q
    |||| |||||||| |||||||||||||| ||||||||||||    ||||||| ||||| | |||||||||||||||| |||||| ||||||||||| ||     
T  5561032 atgccacgtcagtaacacatcaaagattctgctgagtcacagagcatagggggcaatcttgaagaatctttattttacaaggacggaatctaaaaa-aac 5560934  T
Q  135 aatttacagggaggaaaatcaaaaatattctatattacatgggg 178  Q
    || |||||||| |||||| ||||| |  ||||||||||| ||||    
T  5560933 aaattacaggg-ggaaaaccaaaagtgctctatattacaggggg 5560891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 13917229 - 13917326
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    |||||||||||||||| |||||| ||||||||||||||||| ||||||||  ||||| ||||| | | |||||||||| ||| ||||||||||||||||    
T  13917229 aagaatctttattttacaaggacggaatctaaaaataaaaa-ttacaggggagaaaaccaaaagtgtcctatattacaggggataaaactctattaacc 13917326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 37194447 - 37194545
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||| |||| | |||| ||||||| | |||||||||| || |||||  ||||||||||    
T  37194447 aagaatctttattttacaaggacggaatctaaaaaaaaaaatttagagggggaaaaaccaaaaatgtcctatattacagggagtaaagttctattaacc 37194545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 37193633 - 37193526
Alignment:
Q  40 acgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatct--aaaaataaaaat 137  Q
    ||||||||||||||||||||||| |||| |||||||    ||||||| ||||| | |||||||||||||||| |||||  ||||||  |||||||||||     
T  37193633 acgtcagtgacacatcaaagattctgctcagtcacagtgcatagggggcaatcttgaagaatctttattttacaaggatggaatctaaaaaaataaaaaa 37193534  T
Q  138 ttacaggg 145  Q
    ||||||||    
T  37193533 ttacaggg 37193526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 182
Target Start/End: Complemental strand, 40372930 - 40372789
Alignment:
Q  40 acgtcagtgacacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaattt 139  Q
    |||| |||||||| ||||||||| || ||||||||| |  ||  ||| ||||||| || ||||||||||||| | |||  ||||||||||| ||||| ||    
T  40372930 acgttagtgacacgtcaaagattctgttgagtcacagggcatgaggggcaatcctgaaaaatctttattttaaagggatggaatctaaaaaaaaaaaatt 40372831  T
Q  140 acagggaggaaaatcaaaaatattctatattacatggggtaaa 182  Q
    |||||  |||||||||||| |  ||||||||||| ||||||||    
T  40372830 acaggagggaaaatcaaaagtgctctatattaca-ggggtaaa 40372789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 182
Target Start/End: Complemental strand, 14625515 - 14625383
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| |    || || ||||| | ||||||||| |||||| |||||| ||||||||||| |||| ||||||||| | |    
T  14625515 cacatcatagattctgctgagtcacagggctcagagggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaattttacagggggca 14625416  T
Q  150 aaatcaaaaatattctatattacatggggtaaa 182  Q
    ||| ||||| | | |||||||||| ||||||||    
T  14625415 aaaccaaaagtgtcctatattacagggggtaaa 14625383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 178
Target Start/End: Original strand, 52084737 - 52084865
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | |||||||||||||||| |||||| ||||||||||| |||| |||||||||   |    
T  52084737 cacatcatagattctgctgagtcacatggctcagggggcaatcttgaagaatctttattttacaaggacggaatctaaaaaaaaaattttacaggggaca 52084836  T
Q  150 aaatcaaaaatattctatattacatgggg 178  Q
    ||| ||||| |  ||||||||||| ||||    
T  52084837 aaaccaaaagtgctctatattacaggggg 52084865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 24963002 - 24963059
Alignment:
Q  137 tttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    |||||||||||||||||||||||||  |||||||||| |||||||||  |||||||||    
T  24963002 tttacagggaggaaaatcaaaaataacctatattacagggggtaaaagcctattaacc 24963059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 117
Target Start/End: Complemental strand, 2256700 - 2256665
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataagga 117  Q
    ||||||||||||||||||||||||||||||||||||    
T  2256700 aggggtcaatcctaaagaatctttattttataagga 2256665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 14626722 - 14626784
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagg 144  Q
    ||||| ||||| | ||||||||| |||||| |||||| ||||||||||| |||||||||||||    
T  14626722 agggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaaaatttacagg 14626784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 2273645 - 2273552
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacag 143  Q
    ||||||||||||| ||||||||||   |   |||||  ||||| | ||||||||| |||||| |||||| ||||||||||| ||||||||||||    
T  2273645 cacatcaaagattctgctgagtcaatgggcttagggagcaatcgtgaagaatcttcattttacaaggacggaatctaaaaaaaaaaatttacag 2273552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 30537455 - 30537504
Alignment:
Q  81 taggggtcaatcctaaagaatctttattttataaggacagaatctaaaaa 130  Q
    |||||| ||||||| ||||||||||||||||||||||| | |||||||||    
T  30537455 taggggacaatcctgaagaatctttattttataaggacggtatctaaaaa 30537504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 4487677 - 4487605
Alignment:
Q  58 agattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaa 130  Q
    |||||||||||||||| | |   || ||| ||||||| |||||||||||||||| ||||||| ||||||||||    
T  4487677 agattttgctgagtcatagggattatggggcaatcctgaagaatctttattttacaaggacaaaatctaaaaa 4487605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 178
Target Start/End: Original strand, 23322521 - 23322649
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggagga 149  Q
    ||||||||||||| ||||||||||   |   ||| || ||||| | ||||||||| |||||| |||||| ||||||||||| ||| | |||||||| | |    
T  23322521 cacatcaaagattctgctgagtcaatgggcttagagggcaatcgtgaagaatcttcattttacaaggacggaatctaaaaaaaaataattacagggggca 23322620  T
Q  150 aaatcaaaaatattctatattacatgggg 178  Q
    ||| ||||| |  ||||||||||| ||||    
T  23322621 aaaccaaaagtgctctatattacaggggg 23322649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 194
Target Start/End: Complemental strand, 38741612 - 38741476
Alignment:
Q  58 agattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaa 157  Q
    |||||||||||||||| | |   |||||| |||| || |||||||||||||||| |||||   |||||||||| || | ||||||||| | |||| ||||    
T  38741612 agattttgctgagtcataggggttagggggcaattctgaagaatctttattttacaaggatgaaatctaaaaaaaatattttacagggggcaaaaccaaa 38741513  T
Q  158 aatattctatattacatggggtaaaactctattaacc 194  Q
    | | |  ||||||||| ||| ||||||  ||||||||    
T  38741512 agtgtcttatattacaggggttaaaacattattaacc 38741476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 52305288 - 52305347
Alignment:
Q  84 gggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacag 143  Q
    ||||||||||| ||||||||| ||||| |||||   ||||||||||| ||||||||||||    
T  52305288 gggtcaatcctgaagaatcttcattttttaagggtggaatctaaaaaaaaaaatttacag 52305347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 4488661 - 4488767
Alignment:
Q  88 caatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactct 187  Q
    ||||||| ||||||||||||||||| ||||  |||||| |||| || | |||| || | | |||| ||||| | |||||||||| | ||||||||||  |    
T  4488661 caatcctgaagaatctttattttatgaggatggaatcttaaaaaaatattttaaagagggcaaaaccaaaagtgttctatattatagggggtaaaacaat 4488760  T
Q  188 attaacc 194  Q
    |||||||    
T  4488761 attaacc 4488767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 22791672 - 22791610
Alignment:
Q  132 aaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactctattaacc 194  Q
    ||||| ||||||||||||||| || ||||||| |||||||||  ||||||||| ||| |||||    
T  22791672 aaaaaattacagggaggaaaaccataaatattttatattacagagggtaaaacactactaacc 22791610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 37268936 - 37268827
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaa 181  Q
    ||||| ||||||| |||||| ||||||||||||| || ||||||||||| || | ||| ||||| || ||   ||||| |   ||||||||| |||||||    
T  37268936 agggggcaatcctgaagaatttttattttataagaacggaatctaaaaaaaatatttttcaggggggcaa---aaaaaaaccttatattacagggggtaa 37268840  T
Q  182 aactctattaacc 194  Q
    ||| |||||||||    
T  37268839 aacactattaacc 37268827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 5561691 - 5561731
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaaaataaaaa 136  Q
    ||||||||||||||||||||  | |||||||||||||||||    
T  5561691 aagaatctttattttataagagcggaatctaaaaataaaaa 5561731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 9441713 - 9441633
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaa 130  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| |||||| |||||||||||    
T  9441713 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaa 9441633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 9442901 - 9442981
Alignment:
Q  50 cacatcaaagattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaa 130  Q
    ||||||| ||||| |||||||||||| |    ||||| ||||| | ||||||||| |||||| |||||| |||||||||||    
T  9442901 cacatcatagattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacggaatctaaaaa 9442981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 2667 - 2774
Alignment:
Q  88 caatcctaaagaatctttattttataaggacagaatctaaaaataa-aaatttacagggaggaaaatcaaaaatattctatattacatggggtaaaactc 186  Q
    ||||||| |||||||||||||||| ||||||| ||| |||||| || ||||||||| || | |||  ||||| ||  |||||||||| ||||||||||||    
T  2667 caatcctgaagaatctttattttacaaggacaaaatttaaaaaaaataaatttacatggggcaaatccaaaagtaccctatattacagggggtaaaactc 2766  T
Q  187 tattaacc 194  Q
    ||||||||    
T  2767 tattaacc 2774  T

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Target: scaffold0129 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 37334 - 37446
Alignment:
Q  81 taggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggg-gt 179  Q
    |||||| ||||||| |||||||||||||||| |||||| |||||||| |  ||||| |||||||| | |||| ||||| ||| |||||| ||| ||| ||    
T  37334 tagggggcaatcctgaagaatctttattttacaaggacggaatctaata--aaaaaattacagggggcaaaaccaaaagtatcctatatgacaggggtgt 37431  T
Q  180 aaaactctattaacc 194  Q
    |||||||||||||||    
T  37432 aaaactctattaacc 37446  T

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Target: scaffold0227 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 24881 - 24994
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattac-atggggta 180  Q
    ||||| ||||||| |||||||||||||||| |||||| |||| | |||| ||| ||||| |||| | |||||||||| ||  ||||||||| | ||||||    
T  24881 agggggcaatcctgaagaatctttattttacaaggacggaatgtgaaaaaaaatatttatagggggcaaaatcaaaagtaccctatattacaagggggta 24980  T
Q  181 aaactctattaacc 194  Q
    || |||||||||||    
T  24981 aagctctattaacc 24994  T

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Target: scaffold0227; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 23783 - 23751
Alignment:
Q  96 aagaatctttattttataaggacagaatctaaa 128  Q
    ||||||||| |||||||||||||||||||||||    
T  23783 aagaatcttcattttataaggacagaatctaaa 23751  T

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Target: scaffold0040 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 64616 - 64521
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatgggg 178  Q
    ||||| ||||||| |||||||||||||||| ||||||  |||||||||| ||||| |||||||| | |||| ||||| ||  |||||||||| ||||    
T  64616 agggggcaatcctgaagaatctttattttacaaggacgaaatctaaaaa-aaaaaattacagggggcaaaaccaaaagtaccctatattacaggggg 64521  T

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Target: scaffold0093 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 157
Target Start/End: Original strand, 8967 - 9066
Alignment:
Q  58 agattttgctgagtcacaagatataggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacagggaggaaaatcaaa 157  Q
    |||||||||||||||| | |   |||| | ||||||| |||||||||||||||| |||||| ||||||||||| || | |||||| |||| |||| ||||    
T  8967 agattttgctgagtcataggggttaggaggcaatcctgaagaatctttattttacaaggacggaatctaaaaaaaatattttacaaggagcaaaaccaaa 9066  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 139146 - 139234
Alignment:
Q  96 aagaatctttattttataaggacagaatct---aaaaataaaaatttacagggaggaaaatcaaaaatattctatattacatggggtaaa 182  Q
    |||||||||||||||| || ||||||||||   ||||||||||||||||| |||| | |||||||| | |  ||||||||| ||||||||    
T  139146 aagaatctttattttacaatgacagaatctaaaaaaaataaaaatttaca-ggagcagaatcaaaagtgtcatatattacagggggtaaa 139234  T

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Target: scaffold0238 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 3570 - 3628
Alignment:
Q  88 caatcctaaagaatctttattttataaggacagaatctaaaaataaaaatttacaggga 146  Q
    |||||||||||||||||||||||| | ||||  |||||||||| || || |||||||||    
T  3570 caatcctaaagaatctttattttacatggacgaaatctaaaaaaaagaaattacaggga 3628  T

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Target: scaffold0176 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 230 - 327
Alignment:
Q  82 aggggtcaatcctaaagaatctttattttataaggacagaatctaaaaataaa-aatttacagggaggaaaatcaaaaatattctatattacatgggg 178  Q
    ||||| ||||| | ||||||||| ||||||||||||| ||||||||||| |||   ||||||||| | |||| ||||| |   |||||||||||||||    
T  230 agggggcaatcttgaagaatcttcattttataaggacggaatctaaaaaaaaactttttacagggggcaaaaccaaaagtgccctatattacatgggg 327  T

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