View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18517_low_9 (Length: 372)

Name: NF18517_low_9
Description: NF18517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18517_low_9
NF18517_low_9
[»] chr7 (2 HSPs)
chr7 (16-363)||(1718801-1719150)
chr7 (287-355)||(33293588-33293656)
[»] chr1 (4 HSPs)
chr1 (304-355)||(12304911-12304962)
chr1 (243-342)||(9529507-9529607)
chr1 (24-80)||(9529395-9529451)
chr1 (283-363)||(41189263-41189343)
[»] scaffold0457 (2 HSPs)
scaffold0457 (287-363)||(2213-2289)
scaffold0457 (153-193)||(2378-2418)
[»] chr4 (1 HSPs)
chr4 (287-343)||(42874130-42874186)
[»] chr5 (1 HSPs)
chr5 (153-235)||(27022628-27022711)
[»] chr3 (2 HSPs)
chr3 (304-363)||(45077777-45077836)
chr3 (178-237)||(32933190-32933250)
[»] chr2 (3 HSPs)
chr2 (178-235)||(33314403-33314461)
chr2 (24-80)||(2520091-2520147)
chr2 (283-363)||(33314517-33314597)
[»] chr8 (1 HSPs)
chr8 (310-363)||(23038936-23038989)
[»] chr6 (2 HSPs)
chr6 (26-75)||(14691696-14691745)
chr6 (27-75)||(10744204-10744252)


Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 363
Target Start/End: Original strand, 1718801 - 1719150
Alignment:
Q  16 atttcctctgattctcatgaaacaaacatgactctcagagtcatacatttcaatcacaaataacaaaattcaatacatgcacgaatcatcaatagatttt 115  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1718801 atttcctctcattctcatgaaacaaacatgactctcagagtcatacatttcaatcacaaataacaaaattcaatacatgcacgaatcatcaataaatttt 1718900  T
Q  116 g--gnnnnnnnnntacatgtctctcttgttcttgatgttttaaatatgaattttgtagtcatcaatttcaatcacaaacaccgtcatcaatacatgcaca 213  Q
    |  |         | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718901 gaagaaaaaaaaatgcatgtctctcttgttcttgatgttttaaatatgaattttgtagtcatcaatttcaatcacaaacaccgtcatcaatacatgcaca 1719000  T
Q  214 aaccaccaatatatctttcaaatatgtcactcatttttcatgtattaaataggacttttgaattatgtttgtcatgtgagaatataaataatataagtta 313  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  1719001 aaccatcaatatatctttcaaatatgtcactcatttttcgtgtattaaataggacttttgaattatgtgtgtcatgtgagaatatatataatataagtta 1719100  T
Q  314 gaaatacaacgtggttgtaaattttaacccctcttatatttaagtattat 363  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1719101 gaaatacaacgtggttgtaaaatttaacccctcttatatttaagtattat 1719150  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 355
Target Start/End: Complemental strand, 33293656 - 33293588
Alignment:
Q  287 atgtgagaatataaataatataagttagaaatacaacgtggttgtaaattttaacccctcttatattta 355  Q
    ||||||||||| | || ||||| |||| |||||||| ||| |||||||||||| ||||  |||||||||    
T  33293656 atgtgagaataaatattatatatgttaaaaatacaaagtgattgtaaattttagcccccattatattta 33293588  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 304 - 355
Target Start/End: Complemental strand, 12304962 - 12304911
Alignment:
Q  304 atataagttagaaatacaacgtggttgtaaattttaacccctcttatattta 355  Q
    ||||| |||||||||||||  || ||||||||||||||||||||||||||||    
T  12304962 atatatgttagaaatacaaaatgattgtaaattttaacccctcttatattta 12304911  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 342
Target Start/End: Original strand, 9529507 - 9529607
Alignment:
Q  243 ctcatttttcatgtattaaataggac-ttttgaattatgtttgtcatgtgagaatataaataatataagttagaaatacaacgtggttgtaaattttaac 341  Q
    |||||| ||||||||||||||| ||  |||||| | |||  ||||||||||||||  | || ||||| |||||||||||||  || ||||||||||||||    
T  9529507 ctcattattcatgtattaaatatgatgttttgagtgatgaatgtcatgtgagaatgaatattatatatgttagaaatacaatttgattgtaaattttaac 9529606  T
Q  342 c 342  Q
    |    
T  9529607 c 9529607  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 9529395 - 9529451
Alignment:
Q  24 tgattctcatgaaacaaacatgactctcagagtcatacatttcaatcacaaataaca 80  Q
    ||||||||||||| ||| |||||||||  ||| |||||||||| |||||||| ||||    
T  9529395 tgattctcatgaatcaatcatgactctttgagccatacatttctatcacaaacaaca 9529451  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 41189263 - 41189343
Alignment:
Q  283 tgtcatgtgagaatataaataatataagttagaaatacaacgtggttgtaaattttaacccctcttatatttaagtattat 363  Q
    ||||||||||||||  | |||||||| |||||||||||||  |  ||||||||||||| | || ||| ||||| |||||||    
T  41189263 tgtcatgtgagaatgaatataatatatgttagaaatacaaacttattgtaaattttaagctctattacatttatgtattat 41189343  T

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Target: scaffold0457 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 2289 - 2213
Alignment:
Q  287 atgtgagaatataaataatataagttagaaatacaacgtggttgtaaattttaacccctcttatatttaagtattat 363  Q
    ||||||||||| | || ||||| |||| |||||||| ||||||||||| ||||||  || ||||||||| |||||||    
T  2289 atgtgagaataaatattatatatgttaaaaatacaaagtggttgtaaaatttaacttctattatatttacgtattat 2213  T

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Target: scaffold0457; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 2418 - 2378
Alignment:
Q  153 ttaaatatgaattttgtagtcatcaatttcaatcacaaaca 193  Q
    |||||||||||||||| ||||||| |||||||||| |||||    
T  2418 ttaaatatgaattttgaagtcatccatttcaatcaaaaaca 2378  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 42874130 - 42874186
Alignment:
Q  287 atgtgagaatataaataatataagttagaaatacaacgtggttgtaaattttaaccc 343  Q
    ||||||||||| | || ||||| ||||||||||||| ||| ||||||||||||||||    
T  42874130 atgtgagaataaatattatataggttagaaatacaaagtgattgtaaattttaaccc 42874186  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 27022711 - 27022628
Alignment:
Q  153 ttaaatatgaattttgtagtcatcaatttcaatcacaaacaccgtcatcaa-tacatgcacaaaccaccaatatatctttcaaa 235  Q
    |||||||| | ||||| ||||||  |||||||||||||||| |  || ||| ||||||||  ||||||||||||||||||||||    
T  27022711 ttaaatataacttttggagtcatggatttcaatcacaaacaacaacaccaactacatgcatgaaccaccaatatatctttcaaa 27022628  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 45077777 - 45077836
Alignment:
Q  304 atataagttagaaatacaacgtggttgtaaattttaacccctcttatatttaagtattat 363  Q
    |||||||||||||| |||| ||| || |||| ||||||| || |||||||||||||||||    
T  45077777 atataagttagaaacacaaagtgattataaaatttaacctcttttatatttaagtattat 45077836  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 32933190 - 32933250
Alignment:
Q  178 atttcaatcacaaacaccgtcatcaat-acatgcacaaaccaccaatatatctttcaaata 237  Q
    |||||||||||||||| |  ||| ||| |||||||||||| ||||||||||||| ||||||    
T  32933190 atttcaatcacaaacaacaccatgaattacatgcacaaacgaccaatatatcttgcaaata 32933250  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 33314403 - 33314461
Alignment:
Q  178 atttcaatcacaaacaccgtcatcaa-tacatgcacaaaccaccaatatatctttcaaa 235  Q
    |||||||||||||||| | |  |||| ||||||||||||||||||||||||||| ||||    
T  33314403 atttcaatcacaaacaacattgtcaactacatgcacaaaccaccaatatatcttacaaa 33314461  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 2520147 - 2520091
Alignment:
Q  24 tgattctcatgaaacaaacatgactctcagagtcatacatttcaatcacaaataaca 80  Q
    ||||||||||||| |||||||||||   ||||||||  |||||||||||||| ||||    
T  2520147 tgattctcatgaatcaaacatgacttctagagtcatgtatttcaatcacaaacaaca 2520091  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 33314517 - 33314597
Alignment:
Q  283 tgtcatgtgagaatataaataatataagttagaaatacaacgtggttgtaaattttaacccctcttatatttaagtattat 363  Q
    ||||||||||||||  | |||||||| |||||||||||||  |  ||||||||||||| | || ||| ||||| |||||||    
T  33314517 tgtcatgtgagaatgaatataatatatgttagaaatacaaacttattgtaaattttaagctctattacatttatgtattat 33314597  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 23038936 - 23038989
Alignment:
Q  310 gttagaaatacaacgtggttgtaaattttaacccctcttatatttaagtattat 363  Q
    ||||||||||||||||| |||||||||||||| ||| ||| || || |||||||    
T  23038936 gttagaaatacaacgtgattgtaaattttaactcctattacatatatgtattat 23038989  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 14691745 - 14691696
Alignment:
Q  26 attctcatgaaacaaacatgactctcagagtcatacatttcaatcacaaa 75  Q
    |||||||||||  ||| |||| ||||| ||||||||||||||||||||||    
T  14691745 attctcatgaataaaatatgattctcaaagtcatacatttcaatcacaaa 14691696  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 10744252 - 10744204
Alignment:
Q  27 ttctcatgaaacaaacatgactctcagagtcatacatttcaatcacaaa 75  Q
    ||||||||||  ||||||||||||  ||||||| |||||||||||||||    
T  10744252 ttctcatgaattaaacatgactcttggagtcatgcatttcaatcacaaa 10744204  T

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