View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18518_low_1 (Length: 498)
Name: NF18518_low_1
Description: NF18518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18518_low_1 |
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| [»] scaffold1113 (2 HSPs) |
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| [»] scaffold0961 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 32712111 - 32711906
Alignment:
| Q |
10 |
aagaatatcattaagttcaggtagtggtaggcctccatgatgaccaaatattctttgaatcatgtctatcaattctcgatgcgttaatttaaggttttct |
109 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32712111 |
aagagtatcattaaattcaggtagtggtaggcctccatgattaccaaatattctttgaatcatgtctatcaattcttgatgcgttaatttaaggttttct |
32712012 |
T |
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| Q |
110 |
ttaatacgctctacaaatacattgataaacaaagaacccaaagaaccttcggttgacaattcatccagttgggatgatgtgaacaacacaactttgccgt |
209 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32712011 |
ttaatacactctacaaatacattgataaacaaagaacccaaagaaccttcgattgacaattcatccagttgggatgatgtgaacaacacaactttgccgt |
32711912 |
T |
|
| Q |
210 |
gggcta |
215 |
Q |
| |
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|||||| |
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| T |
32711911 |
gggcta |
32711906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 234 - 373
Target Start/End: Complemental strand, 32714723 - 32714584
Alignment:
| Q |
234 |
tctgtttcttggattcaccaaacaataattcaattgatgtaagtgnnnnnnnntatccataacccttgctagatgaaagtgtgatactgctggaaactgg |
333 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| ||||| ||||||||| ||||| |||||||| |
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| T |
32714723 |
tctgtttcttggattcaccaaacaatgattcaattgatgtaagtgaaaaaaacaatccataatccttgcaagatgtaagtgtgatgctgctagaaactgg |
32714624 |
T |
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| Q |
334 |
caccgaacaaaaacagattgcaccatacaaatacttaatt |
373 |
Q |
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| T |
32714623 |
cactgaacagaaacagattgcaccacacaaatacttaatt |
32714584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 55 - 208
Target Start/End: Original strand, 32710555 - 32710712
Alignment:
| Q |
55 |
aaatattctttgaatcatgtctatcaattctcgatgcgttaatttaaggttttctttaatacgctctacaaatacattgataaacaaagaacccaaagaa |
154 |
Q |
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| T |
32710555 |
aaatattctttggatcatgtctatcaattcttaatgcattattttagggttttttttaacacaatctataaatacattggtaaacacagaacccaaagaa |
32710654 |
T |
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| Q |
155 |
ccttcggttgacaattcatccagttgggatga----tgtgaacaacacaactttgccg |
208 |
Q |
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| T |
32710655 |
cttttggttgaaagttcatccaattgagatgatgtttgtgaacaacacaactttgccg |
32710712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 205
Target Start/End: Original strand, 32676595 - 32676724
Alignment:
| Q |
76 |
tatcaattctcgatgcgttaatttaaggttttctttaatacgctctacaaatacattgataaacaaagaacccaaagaaccttcggttgacaattcatcc |
175 |
Q |
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|||||||| | |||||||| || |||||||| ||||| || | |||||| |||||| |||||||||| |||||||||||| |||||||| ||||||| |
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| T |
32676595 |
tatcaattgttgatgcgttgtttgaaggttttgtttaacacaatttacaaacacattggtaaacaaagatcccaaagaacctccggttgactcttcatcc |
32676694 |
T |
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| Q |
176 |
agttgggatgatgtgaacaacacaactttg |
205 |
Q |
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|| |||||||| |||||||||||||| |
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| T |
32676695 |
tatttggatgatgcatacaacacaactttg |
32676724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 32677946 - 32677817
Alignment:
| Q |
76 |
tatcaattctcgatgcgttaatttaaggttttctttaatacgctctacaaatacattgataaacaaagaacccaaagaaccttcggttgacaattcatcc |
175 |
Q |
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|||||||| | |||||||| || |||||||| ||||| || | |||||| |||||| |||||||||| |||||||||||| | |||||| ||||||| |
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| T |
32677946 |
tatcaattgttgatgcgttgtttgaaggttttgtttaacacaatttacaaacacattggtaaacaaagatcccaaagaacctccagttgactcttcatcc |
32677847 |
T |
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| Q |
176 |
agttgggatgatgtgaacaacacaactttg |
205 |
Q |
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||| |||||||| |||||||||||||| |
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| T |
32677846 |
tgtttggatgatgcatacaacacaactttg |
32677817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 278
Target Start/End: Complemental strand, 32692568 - 32692534
Alignment:
| Q |
244 |
ggattcaccaaacaataattcaattgatgtaagtg |
278 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
32692568 |
ggattcaccaaacaataattcaattgatgtaagtg |
32692534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 474
Target Start/End: Original strand, 33010731 - 33010776
Alignment:
| Q |
429 |
aacttgaggataaaacataacataattcaatttccatttcttactc |
474 |
Q |
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| T |
33010731 |
aacttgaggataaaacggaacatagttcaatttccttttcttactc |
33010776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 363 - 476
Target Start/End: Original strand, 1270 - 1383
Alignment:
| Q |
363 |
aatacttaattagttatataggaaatagttcagaaaagaccaagattgaagagcttggttctctataacttgaggataaaacataacataattcaatttc |
462 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1270 |
aatagttaattagttatataggaaatagttcagaaaagaccaagattcaagagcttggttctctataacttgaggataaaacataacataattcaatttc |
1369 |
T |
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| Q |
463 |
catttcttactcta |
476 |
Q |
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||||||||||||| |
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| T |
1370 |
aatttcttactcta |
1383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 243 - 373
Target Start/End: Original strand, 1125 - 1255
Alignment:
| Q |
243 |
tggattcaccaaacaataattcaattgatgtaagtgnnnnnnnntatccataacccttgctagatgaaagtgtgatactgctggaaactggcaccgaaca |
342 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
1125 |
tggattcaccaaacaataattcaattgatgtaagtgaaaaaaaatatccataacccttgctagatgcaagtgtgatactgctggaaactggcactgaaca |
1224 |
T |
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| Q |
343 |
aaaacagattgcaccatacaaatacttaatt |
373 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1225 |
aaaacagattgcaccatacaaatacttaatt |
1255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 363 - 476
Target Start/End: Complemental strand, 2347 - 2234
Alignment:
| Q |
363 |
aatacttaattagttatataggaaatagttcagaaaagaccaagattgaagagcttggttctctataacttgaggataaaacataacataattcaatttc |
462 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2347 |
aatagttaattagttatataggaaatagttcagaaaagaccaagattcaagagcttggttctctataacttgaggataaaacataacataattcaatttc |
2248 |
T |
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| Q |
463 |
catttcttactcta |
476 |
Q |
| |
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||||||||||||| |
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| T |
2247 |
aatttcttactcta |
2234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 324 - 373
Target Start/End: Complemental strand, 2411 - 2362
Alignment:
| Q |
324 |
tggaaactggcaccgaacaaaaacagattgcaccatacaaatacttaatt |
373 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
2411 |
tggaaactggcactgaacaaaaacagattgcaccatacaaatacttaatt |
2362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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