View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18518_low_2 (Length: 460)
Name: NF18518_low_2
Description: NF18518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18518_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 9 - 404
Target Start/End: Original strand, 46009300 - 46009695
Alignment:
| Q |
9 |
gaagaatatagtgcatataatctcaactacatggacctgcttatgaaactccactatatccgatccatatacttgttcaattctaaagcggttcaaaacc |
108 |
Q |
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| T |
46009300 |
gaagaaaatagtgcatataatctcaactacatggacctgcttatgaaactccactatatccgatccatatacttgttcaattctaaagcggttcaaaacc |
46009399 |
T |
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| Q |
109 |
tctcaatacctgacttaaaagcaccaatgtttccactacttgattcatactcacatgtttcaggtagggttagaatatcagaatcaggaagaccgtttat |
208 |
Q |
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| T |
46009400 |
tctcaatatctgacttaaaagcaccaatgtttcaactacttgattcatactcacatgtttcaggtagggttagaatatcagaatcaggaagaccgtttat |
46009499 |
T |
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| Q |
209 |
caagtgcaacgacgcgggtgtgcgaatagcagagtcacactgtgagaatacactgcgtgaatggtttgatgagaaagagtactctattgatgaacttgta |
308 |
Q |
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| T |
46009500 |
caagtgcaacgacgcgggtgtgcgaatagcagagtcacactgtgagaaaacactgcgtgaatggttggatgagaaagagtactctgttgatgaacttgta |
46009599 |
T |
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| Q |
309 |
tatgatcatgtgcttggtcctgatcttgctttttctcctttggtttttgtcaaggtacgtactatctttttcatgtttatataagagacataatca |
404 |
Q |
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| T |
46009600 |
tatgatcatgtgcttggtcctgatcttgcattttctcctttggtttttgtcaaggtacgtactatctttttcatgtttatatattagacataatca |
46009695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 397 - 443
Target Start/End: Original strand, 46009743 - 46009789
Alignment:
| Q |
397 |
cataatcacgttattgagaaattgtgatgttaatcaataaatcgttt |
443 |
Q |
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| T |
46009743 |
cataatcacgttattgagaaattgtgatgttaatcaataaatcgttt |
46009789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 33 - 372
Target Start/End: Original strand, 15921959 - 15922298
Alignment:
| Q |
33 |
aactacatggacctgcttatgaaactccactatatccgatccatatacttgttcaattctaaagcggttcaaaacctctcaatacctgacttaaaagcac |
132 |
Q |
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| T |
15921959 |
aactacatggacttgttgatgaagcttcactatgtccggtccatttatttcttcgattctgaagctgttcaaggccttacaatatccgatttaaaaacac |
15922058 |
T |
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| Q |
133 |
caatgtttccactacttgattcatactcacatgtttcaggtagggttagaatatcagaatcaggaagaccgtttatcaagtgcaacgacgcgggtgtgcg |
232 |
Q |
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| T |
15922059 |
cgatgtttccactgctggatttgtactcgcatgttgccggtcgagttagaatagccaaatccggcagaccgtttatcaaatgcaatgatgccggtgtgcg |
15922158 |
T |
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| Q |
233 |
aatagcagagtcacactgtgagaatacactgcgtgaatggtttgatgagaaagagtactctattgatgaacttgtatatgatcatgtgcttggtcctgat |
332 |
Q |
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| T |
15922159 |
aatcgcggagtcgcagtgtgataaaacgctgagggaatggttggatgaaaatgagtattcagttgatgaacttgttcatgatcatgtgcttggtcctgat |
15922258 |
T |
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| Q |
333 |
cttgctttttctcctttggtttttgtcaaggtacgtacta |
372 |
Q |
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| T |
15922259 |
cttgctttttctcctttggtttttgtcaaggtacgtacta |
15922298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 33 - 369
Target Start/End: Original strand, 13114257 - 13114593
Alignment:
| Q |
33 |
aactacatggacctgcttatgaaactccactatatccgatccatatacttgttcaattctaaagcggttcaaaacctctcaatacctgacttaaaagcac |
132 |
Q |
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| T |
13114257 |
aactacatggacttgctaatgaaactccactatatccgatcaatttatgtattcaactctgaagtcatgcaaaacctctcattatccgacttaaaaacac |
13114356 |
T |
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| Q |
133 |
caatgtttccactacttgattcatactcacatgtttcaggtagggttagaatatcagaatcaggaagaccgtttatcaagtgcaacgacgcgggtgtgcg |
232 |
Q |
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| T |
13114357 |
caatttatgcactactcgagtcttgctcacatgtttcaggtcggattagaatactcgaatctggaagaccgtttatcaagtgcaacgatgcaggagtacg |
13114456 |
T |
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| Q |
233 |
aatagcagagtcacactgtgagaatacactgcgtgaatggtttgatgagaaagagtactctattgatgaacttgtatatgatcatgtgcttggtcctgat |
332 |
Q |
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| T |
13114457 |
cgtggctgagacacggtgtgataaaacgctgcatgaatggtttgatgaaaaagaatacagtgttgaaggatttgtcccagatcatgtgcttggtcctgat |
13114556 |
T |
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| Q |
333 |
cttgctttttctcctttggtttttgtcaaggtacgta |
369 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
13114557 |
cttgctttttctccattggtttttgtcaaggtacgta |
13114593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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