View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18518_low_3 (Length: 233)

Name: NF18518_low_3
Description: NF18518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18518_low_3
NF18518_low_3
[»] chr4 (7 HSPs)
chr4 (11-217)||(832040-832246)
chr4 (155-212)||(6388207-6388264)
chr4 (136-212)||(10464217-10464293)
chr4 (136-212)||(10475155-10475231)
chr4 (155-212)||(6372412-6372469)
chr4 (155-212)||(11971028-11971085)
chr4 (136-212)||(10482129-10482205)
[»] chr7 (1 HSPs)
chr7 (155-212)||(13416957-13417014)
[»] chr2 (2 HSPs)
chr2 (155-208)||(554443-554496)
chr2 (134-189)||(25377020-25377075)
[»] chr8 (1 HSPs)
chr8 (133-212)||(42846471-42846551)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 832040 - 832246
Alignment:
Q  11 gattattctaattcaggatattttgatttggatcataggtttattgctgacgaggactatgtgattatttcacttgatctgtccacagacacatatatac 110  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  832040 gattactctaattcaggatattttgatttggatcataggtttattactgacgaggactatgtgattatttcacttgatctctccacagacacatacatac 832139  T
Q  111 actcagctgttacaagccaattgaacttgtggttttgagggaaagtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  832140 actcagctgttacaagccaattgaacttgtggttttgagggaaagtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaag 832239  T
Q  211 gagtctt 217  Q
    |||||||    
T  832240 gagtctt 832246  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 6388207 - 6388264
Alignment:
Q  155 gtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 212  Q
    |||||||||||||||||||||||||| |||| |||  | | |||||||||||||||||    
T  6388207 gtctttgtttttgtcatgattttgaggaaactcattctgttatatggcaaatgaagga 6388264  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 10464217 - 10464293
Alignment:
Q  136 cttgtggttttgagggaaagtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 212  Q
    ||||||||||||| |||  |||||||||||||| |||||||  | || |||||| || | |||||||||||||||||    
T  10464217 cttgtggttttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaagga 10464293  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 10475155 - 10475231
Alignment:
Q  136 cttgtggttttgagggaaagtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 212  Q
    ||||||||||||| |||  |||||||||||||| |||||||  | || |||||| || | |||||||||||||||||    
T  10475155 cttgtggttttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaagga 10475231  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 6372412 - 6372469
Alignment:
Q  155 gtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 212  Q
    |||||||||||||| || | | |||| |||||||| |||| |||||||||||||||||    
T  6372412 gtctttgtttttgtaataactatgaggaaacccattttattatatggcaaatgaagga 6372469  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 11971085 - 11971028
Alignment:
Q  155 gtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 212  Q
    |||||||||||| ||||||||||||  |||| ||| || | |||||||||||||||||    
T  11971085 gtctttgtttttctcatgattttgaacaaactcattttgttatatggcaaatgaagga 11971028  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 10482129 - 10482205
Alignment:
Q  136 cttgtggttttgagggaaagtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 212  Q
    |||| |||||||| |||  ||||||||||| ||||||||| |||| ||||  || || | |||||||||||||||||    
T  10482129 cttgcggttttgatggattgtctttgttttggtcatgattatgaggaaacttattttgttatatggcaaatgaagga 10482205  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 13417014 - 13416957
Alignment:
Q  155 gtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 212  Q
    |||||||||||| | |||||||| |||||||| || |||| |||||||||||||||||    
T  13417014 gtctttgtttttcttatgattttaagaaaacctattttatcatatggcaaatgaagga 13416957  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 554443 - 554496
Alignment:
Q  155 gtctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatga 208  Q
    |||||||||||| ||| |||||||||  |||||||||||| |||||||||||||    
T  554443 gtctttgtttttctcacgattttgagggaacccatcttattatatggcaaatga 554496  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 25377020 - 25377075
Alignment:
Q  134 aacttgtggttttgagggaaagtctttgtttttgtcatgattttgagaaaacccat 189  Q
    ||||||||||||||| |||  |||||||||||||||||||||| ||| ||| ||||    
T  25377020 aacttgtggttttgacggactgtctttgtttttgtcatgatttggaggaaaaccat 25377075  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 42846551 - 42846471
Alignment:
Q  133 gaacttgtggttttgagggaaagtctttgtttttgt-catgattttgagaaaacccatcttatgatatggcaaatgaagga 212  Q
    |||||||||||||||||||| | ||||  ||||| | |||||||||||| |||||||| || | || ||||||||||||||    
T  42846551 gaacttgtggttttgagggacactcttaattttttttcatgattttgaggaaacccattttgttatttggcaaatgaagga 42846471  T

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