View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18519_high_2 (Length: 375)
Name: NF18519_high_2
Description: NF18519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18519_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 51162366 - 51162274
Alignment:
| Q |
207 |
caacctaaattatatcatttttcaatagtaaattgtaagtaaacactgggtttcaaattcaagactaaaacaaggcactccataaacgagtac |
299 |
Q |
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| T |
51162366 |
caacctaaattatatcatttttcaatagtaaattgtaagtaaacactgggtttcaaattcaagactaaaacaaggcactctataaacgagtac |
51162274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 51162461 - 51162400
Alignment:
| Q |
112 |
caaataggttggcttttatatagagaattaaatgaggaagagtatttctactttgtaccatt |
173 |
Q |
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| T |
51162461 |
caaataggttggcttttatatagagaattaaatgaggaagagtgtttctactttgtaccatt |
51162400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 51150409 - 51150307
Alignment:
| Q |
11 |
atgaacaagactattctaccgtcagtggctgccatttttatccactcacg--cacaagcaatatatgaaggcaatgaccgtgggatttgagaaatgaagg |
108 |
Q |
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| T |
51150409 |
atgaacaagattattttcccatgagtggctgccatttttatccacacccagacacacgcaatataggaagacaagaactgtgggatttgagaaatgaagg |
51150310 |
T |
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| Q |
109 |
acc |
111 |
Q |
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| T |
51150309 |
acc |
51150307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 51162710 - 51162608
Alignment:
| Q |
11 |
atgaacaagactattctaccgtcagtggctgccatttttatccactcacg--cacaagcaatatatgaaggcaatgaccgtgggatttgagaaatgaagg |
108 |
Q |
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| T |
51162710 |
atgaacaagattattttcccatgagtggctgccatttttatccacacccagacacacgcaatataggaagacaagaactgtgggatttgagaaatgaagg |
51162611 |
T |
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| Q |
109 |
acc |
111 |
Q |
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| T |
51162610 |
acc |
51162608 |
T |
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