View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18519_low_1 (Length: 500)
Name: NF18519_low_1
Description: NF18519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18519_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Complemental strand, 5699267 - 5698804
Alignment:
| Q |
18 |
gaaaagacactgcaattggacttcttacaacatgatatttgtcggtccaaatataccatccaaaaaagtaattctcaggatcacacttacttggtaactg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5699267 |
gaaaagacactgcaattggacttcttacaacatgatatttgtcggtccaaatataccatccaaaaaagtaattctcaggatcacacttacttggtaactg |
5699168 |
T |
|
| Q |
118 |
atctttatttgctgtcactgtgatgacaaaatttcttttctgtccaacatgtttaaatttcagaacatttggagtggctaaaatgttgaattcctttggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5699167 |
atctttatttgctgtcactgtgatgacaaaatttcttttctgtccaacatgtttaaatttcagaacatttggagtggctaaaatgttgaattcctttggt |
5699068 |
T |
|
| Q |
218 |
gtattagcaataaacttgtaaacactcttgctactaccaacatttgtcactgtcctctttatagttttggtgtaattgagtttatggatttgtattgatg |
317 |
Q |
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| T |
5699067 |
gtattagcaataaacttgtaaacactcttgctactaccaacatttgtcactgtcctctttatagttttggtgtaattgagtttatggatttgtattgatg |
5698968 |
T |
|
| Q |
318 |
gatagttaagatcaaatggttgaggtagtgggtttggacaattatatgtaaggtttatgtgttgtgttaaattaagattgcaaaggtaaagaaggtaatc |
417 |
Q |
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| T |
5698967 |
gatagttgagatcaaatggttgaggtagtgggtttggacaattatatgtaaggtttatgtgttgtgttaaattaagattacaaaggtaaagaaggtaatc |
5698868 |
T |
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| Q |
418 |
catgtaggatgcatcataaatgagtcctggattggatgctcttatagggttgaagtggcctgaa |
481 |
Q |
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| T |
5698867 |
catgtaggatgcatcataaatgagtcctggatctgatgctcttttagggtagaagtggcctgaa |
5698804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Complemental strand, 5687062 - 5686599
Alignment:
| Q |
18 |
gaaaagacactgcaattggacttcttacaacatgatatttgtcggtccaaatataccatccaaaaaagtaattctcaggatcacacttacttggtaactg |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| |
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| T |
5687062 |
gaaaagacactgcaattggacttcttacaacatgataattgtcggtccaaatataccatccaaaatagtatttatcaggatcacacttacttggtaactg |
5686963 |
T |
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| Q |
118 |
atctttatttgctgtcactgtgatgacaaaatttcttttctgtccaacatgtttaaatttcagaacatttggagtggctaaaatgttgaattcctttggt |
217 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
5686962 |
atctctatttgctgtcactgtgatgacaaaattccttttctgtccaacatgtttaaatttcagaacacttgaagtggctaaaatgttgaattcctttggt |
5686863 |
T |
|
| Q |
218 |
gtattagcaataaacttgtaaacactcttgctactaccaacatttgtcactgtcctctttatagttttggtgtaattgagtttatggatttgtattgatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5686862 |
gtattagcaataaacttgtaaacactcttgctactaccaacatttgtcactgtcctctttatagttttggtgtaattgagtttatggatttgtattgatg |
5686763 |
T |
|
| Q |
318 |
gatagttaagatcaaatggttgaggtagtgggtttggacaattatatgtaaggtttatgtgttgtgttaaattaagattgcaaaggtaaagaaggtaatc |
417 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5686762 |
gatagttgagatcaaatggttgaggtagtgggtttggacaattatatgtaaggtttatgtgttgtgttaaattaagattacaaaggtaaagaaggtaatc |
5686663 |
T |
|
| Q |
418 |
catgtaggatgcatcataaatgagtcctggattggatgctcttatagggttgaagtggcctgaa |
481 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||| |
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|
| T |
5686662 |
catgtaggatgcatcataaatgagtcctggatctgatgctcttttagggtagaagtggcctgaa |
5686599 |
T |
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