View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18519_low_5 (Length: 242)
Name: NF18519_low_5
Description: NF18519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18519_low_5 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 12813403 - 12813642
Alignment:
| Q |
1 |
tgaaaagcttcaaatatcattatctctttctttgaaacccataaatcatctctatcattgtttgaattgnnnnnnnnngaaagaggaagagtaagattgg |
100 |
Q |
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| T |
12813403 |
tgaaaagtttcaaatatcattatctctttctttgaaacccataaatcatctctatcactgtttgaattgaaacaaa--gaaagaggaagagtaagattgg |
12813500 |
T |
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| Q |
101 |
tgattagtttcgtttgagggtttgacagatgattgcaaaagtggttttctaacaccagtaagagaatgatcatacattccaataacctcctgaagagcca |
200 |
Q |
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| T |
12813501 |
tgattagtttcgtttgagggtttgacagatgattgcaaaagtggttttctaacaccagtaagagaatgatcatacattccaataacctcctgaagagcca |
12813600 |
T |
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| Q |
201 |
acttcctcaactcttcttgtaggccatcaccagtaagccacc |
242 |
Q |
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| T |
12813601 |
acttcctcaactcttcttgtaggccatcaccagtaagccacc |
12813642 |
T |
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Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 30621994 - 30622076
Alignment:
| Q |
160 |
aagagaatgatcatacattccaataacctcctgaagagccaacttcctcaactcttcttgtaggccatcaccagtaagccacc |
242 |
Q |
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| T |
30621994 |
aagagaatgatcgtacattccaataacctcgtgaagagccaacttcctcaactcctcttgtgggccatcaccagtaagccacc |
30622076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 22418243 - 22418305
Alignment:
| Q |
1 |
tgaaaagcttcaaatatcattatctctttctttgaaacccataaatcatctctatcattgttt |
63 |
Q |
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| T |
22418243 |
tgaaaagcttcaaatatcattatctctttctttgaaacccatatatcatctctatcattgttt |
22418305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 22418304 - 22418343
Alignment:
| Q |
203 |
ttcctcaactcttcttgtaggccatcaccagtaagccacc |
242 |
Q |
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| T |
22418304 |
ttcctcaactcttcttgtaggccatcactagtaagccacc |
22418343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 14998381 - 14998449
Alignment:
| Q |
1 |
tgaaaagcttcaaatatcattatctctttctttgaaacccataaatcatctctatcattgtttgaattg |
69 |
Q |
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| T |
14998381 |
tgaaaagcttaaaatatcattatctctttctttcaaacccagaaatcatctttatcactgtttgaattg |
14998449 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 48292701 - 48292638
Alignment:
| Q |
87 |
aagagtaagattggtgattagtttcgtttgagggtttgacagatgattgcaaaagtggttttct |
150 |
Q |
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| T |
48292701 |
aagagtgagaatggtgattagttacgtttgagggtttgacagatgagagcaaaagtggctttct |
48292638 |
T |
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