View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1851_high_14 (Length: 259)
Name: NF1851_high_14
Description: NF1851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1851_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 51 - 239
Target Start/End: Complemental strand, 36917590 - 36917407
Alignment:
| Q |
51 |
tcatatacttattgttacatacatactgtactatccaatttctttgatagttcaagctgattatataattttatgattaatacagctccagagaagagac |
150 |
Q |
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| T |
36917590 |
tcatatacttattgttacata-----tatactatccaatttctttgatagttcaagctgattatataattttatgattaatacagctccagagaagagac |
36917496 |
T |
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| Q |
151 |
agcgtgttccttctgcttataatcggttcattaagtaagtaacattttccaatttgcaattctaagatcaactctccatctattcttgt |
239 |
Q |
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| T |
36917495 |
aacgtgttccttctgcttataatcggttcattaagtaagtaacattttccaatttgcaattctaagatcaactctccatctattcttgt |
36917407 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 47233662 - 47233607
Alignment:
| Q |
133 |
cagctccagagaagagacagcgtgttccttctgcttataatcggttcattaagtaa |
188 |
Q |
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| T |
47233662 |
cagctcccgagaagaggcaacgtgtcccttctgcttataatcagttcatcaagtaa |
47233607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 17801798 - 17801848
Alignment:
| Q |
140 |
agagaagagacagcgtgttccttctgcttataatcggttcattaagtaagt |
190 |
Q |
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| T |
17801798 |
agagaaaagacatcgtgttccttcagcttacaaccggttcattaagtaagt |
17801848 |
T |
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