View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1851_high_16 (Length: 253)

Name: NF1851_high_16
Description: NF1851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1851_high_16
NF1851_high_16
[»] chr7 (11 HSPs)
chr7 (19-253)||(39622125-39622359)
chr7 (19-230)||(39547529-39547740)
chr7 (19-209)||(39365955-39366145)
chr7 (19-230)||(39564308-39564519)
chr7 (19-230)||(39538071-39538282)
chr7 (19-209)||(39353445-39353635)
chr7 (19-230)||(39338581-39338792)
chr7 (19-198)||(39589357-39589536)
chr7 (19-198)||(39575119-39575298)
chr7 (19-166)||(1084865-1085013)
chr7 (110-191)||(42133156-42133237)
[»] chr2 (3 HSPs)
chr2 (22-230)||(44223209-44223417)
chr2 (110-230)||(44211135-44211255)
chr2 (110-230)||(44234119-44234239)
[»] chr4 (2 HSPs)
chr4 (88-218)||(2877126-2877256)
chr4 (124-171)||(46451752-46451799)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 39622125 - 39622359
Alignment:
Q  19 ggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622125 ggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatc 39622224  T
Q  119 ctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622225 ctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccact 39622324  T
Q  219 gacaccattcaataggttcaacctttccccgacaa 253  Q
    |||||||||||||||||||||||||||||||||||    
T  39622325 gacaccattcaataggttcaacctttccccgacaa 39622359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 39547529 - 39547740
Alignment:
Q  19 ggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatc 118  Q
    ||||||||||||| | |||| |||||||||||  ||| |||||||||||| || |||||||||| ||||||||| ||||||||| |||||||||||||||    
T  39547529 ggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtatcttgcttctttggatagccagatattgtgatgttcccaccaatatatc 39547628  T
Q  119 ctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccact 218  Q
    | |  |||||||| ||||  |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||||| |  |||||    
T  39547629 caccagtttttctaccagaaagtacatccatcagagttgttttgcctgcaccagtcacacccatcagagcagtgagaacaccaggtctgaaagctccact 39547728  T
Q  219 gacaccattcaa 230  Q
     ||||| |||||    
T  39547729 tacacccttcaa 39547740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 39366145 - 39365955
Alignment:
Q  19 ggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatc 118  Q
    ||||||||||||| | |||| || ||||||||| ||| ||||||||||||||| |||||||||| ||||||||| ||||||||| |||||||||||||||    
T  39366145 ggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtttcttgcttctttggatagccagatattgtgatgttcccaccaatatatc 39366046  T
Q  119 ctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaa 209  Q
    | |  |||||||| ||||  || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||    
T  39366045 caccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagccgtgagaacacctggtctgaa 39365955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 39564308 - 39564519
Alignment:
Q  19 ggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatc 118  Q
    ||||| ||||||| |||||| |||||||| ||| ||| ||||||||||||||| |||||||||| | |||| |||||||||||| |||||||||||||||    
T  39564308 ggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattgtgatgttcccaccaatatatc 39564407  T
Q  119 ctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccact 218  Q
    ||| |||||| || ||||  || ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| | |||||||| |  |||||    
T  39564408 ctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccattagagcagtgagaacaccaggtctgaaagctccact 39564507  T
Q  219 gacaccattcaa 230  Q
     ||||| |||||    
T  39564508 tacacccttcaa 39564519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 39538071 - 39538282
Alignment:
Q  19 ggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatc 118  Q
    ||||||||||||| | |||| |||||||||||  ||| |||||||||||| || |||||||||| ||||||||||||||||||| |||||||||||||||    
T  39538071 ggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtatcttgcttctttggatagccagaaattgtgatgttcccaccaatatatc 39538170  T
Q  119 ctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccact 218  Q
    | |  |||||||| ||||  || ||||||||||||||||||||||| ||||| || || ||||||||||| ||||||||| | |||||||| |  |||||    
T  39538171 caccagtttttctaccagaaagcacatccatcagagttgttttgcctgcacccgtgacgcccatcagagcagtgagaacacctggtctgaaagctccact 39538270  T
Q  219 gacaccattcaa 230  Q
    || ||| |||||    
T  39538271 gagacctttcaa 39538282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 39353635 - 39353445
Alignment:
Q  19 ggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatc 118  Q
    ||||||||||||| | |||| |||||||||||| ||| ||||||||||||||| ||||| |||| |||||| |||||||||||| |||||||||||||||    
T  39353635 ggagaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgcttttttggatagccggaaattgtgatgttcccaccaatatatc 39353536  T
Q  119 ctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaa 209  Q
    | | ||||||||| ||||  || |||||||| ||||||||||| ||||||||||| |  ||||||||||| ||||||||| | ||||||||    
T  39353535 caccggtttttctaccagaaagcacatccattagagttgtttttccagcaccagtgatgcccatcagagccgtgagaacacctggtctgaa 39353445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 39338792 - 39338581
Alignment:
Q  19 ggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatc 118  Q
    ||||||||||||| | |||| |||||||||||| ||| ||||||||||||||| |||||||||| | |||| |||||| ||||| |||||||||||||||    
T  39338792 ggagaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgcttctttggaaagccggaaattttgatgttcccaccaatatatc 39338693  T
Q  119 ctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccact 218  Q
    | |  |||||||| ||||  || |||||||||||||||||||| |||||||| || |  ||||||||||| ||||||||| | |||||||| |  |||||    
T  39338692 caccagtttttctaccagaaagcacatccatcagagttgttttcccagcaccggtgatgcccatcagagcggtgagaacacctggtctgaaagctccact 39338593  T
Q  219 gacaccattcaa 230  Q
     ||||| |||||    
T  39338592 tacacccttcaa 39338581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 39589357 - 39589536
Alignment:
Q  19 ggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatc 118  Q
    ||||| ||||||| |||||| |||||||||||| ||| ||||||||| ||||| |||||||| | ||| |||||||||||||||||||||||||||||||    
T  39589357 ggagagtggatatcattttgctcacagtatccagaaattcttgcaaatgtttcttgcttcttaggatatccagaaattgtgatggtcccaccaatatatc 39589456  T
Q  119 ctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaaca 198  Q
    | |  |||||||| ||||  || ||||||| || ||| ||||| |||||||| || || ||||| | ||| |||||||||    
T  39589457 caccagtttttctaccagaaagcacatccaacaaagtagtttttccagcacccgtgacgcccattaaagcagtgagaaca 39589536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 39575119 - 39575298
Alignment:
Q  19 ggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatc 118  Q
    ||||| || |||| |||||| |||||||||||  ||| ||||||||||||||| ||||| || | ||  || |||| ||||||| |||||| ||||||||    
T  39575119 ggagagtgtatatcattttgctcacagtatccggaaattcttgcaaaggtttcttgctttttgggatgcccggaaactgtgatgttcccactaatatatc 39575218  T
Q  119 ctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaaca 198  Q
    | |   |||| || ||||| ||||||||||||| ||||||||||||||||||||| |||||||| || || |||||||||    
T  39575219 ccccacttttcctaccagcaagtacatccatcaaagttgttttgccagcaccagtgacacccataagtgcagtgagaaca 39575298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 1084865 - 1085013
Alignment:
Q  19 ggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgctt--ctttgaatagccagaaattgtgatggtcccaccaatata 116  Q
    |||||||||||||   |||| |||||||||||| ||| ||||| ||| ||||| |||||  || || ||||||||||||| ||||| |||||||||||||    
T  1084865 ggagaatggatatctatttgctcacagtatccagaaattcttgtaaatgtttcttgcttttctatggatagccagaaattatgatgttcccaccaatata 1084964  T
Q  117 tcctctggtttttcttccagctagtacatccatcagagttgttttgccag 166  Q
    |||    |||||||| ||||  || |||||||||| ||||||||||||||    
T  1084965 tccatcagtttttctaccag-aagcacatccatcaaagttgttttgccag 1085013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 42133156 - 42133237
Alignment:
Q  110 caatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgt 191  Q
    |||||||||| |  ||||||||||| |||| ||||||||| || ||||| || ||||||||| | |||||||| || |||||    
T  42133156 caatatatccacctgtttttcttccggctaatacatccatgagggttgtctttccagcaccactgacacccataagtgctgt 42133237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 44223209 - 44223417
Alignment:
Q  22 gaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgcttctttgaatagccagaaattgtgatggtcccaccaatatatcctc 121  Q
    |||||||||| ||| || |||||||| ||| ||| ||| ||||| ||||| ||||| || |  || |||||||   |||||   ||| |||||||||| |    
T  44223209 gaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagaaaccttgatgtctccatcaatatatccac 44223308  T
Q  122 tggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccactgac 221  Q
      ||||| || ||||| || |||||||||||||||||||| ||||| ||| | |||||||||| ||||||||||||| | || ||||||| |||||| ||    
T  44223309 ctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaatgcaccactaac 44223408  T
Q  222 accattcaa 230  Q
    ||| |||||    
T  44223409 acccttcaa 44223417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 44211135 - 44211255
Alignment:
Q  110 caatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaa 209  Q
    |||||||||| |  ||||| || ||||| || |||||||||||||||||||| ||||| ||| | |||||||||| ||||||||||||| | || |||||    
T  44211135 caatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaa 44211234  T
Q  210 tgaaccactgacaccattcaa 230  Q
    || ||| || ||||| |||||    
T  44211235 tgcaccgctaacacccttcaa 44211255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 44234119 - 44234239
Alignment:
Q  110 caatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaa 209  Q
    |||||||||| |  ||||| || ||||| || |||||||||||||||||||| ||||| ||| | |||||||||| ||| || || ||| | || |||||    
T  44234119 caatatatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagccgtaagtacaccaggcctgaa 44234218  T
Q  210 tgaaccactgacaccattcaa 230  Q
    ||  ||||| ||||| |||||    
T  44234219 tgcgccactaacacccttcaa 44234239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 2877256 - 2877126
Alignment:
Q  88 ccagaaattgtgatggtcccaccaatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagag 187  Q
    ||||||||| | ||| ||||| ||||||| || || ||||| || ||||| | ||||||||||| ||| ||||| ||||| ||| | |||||||||| ||    
T  2877256 ccagaaatttttatgctcccatcaatataaccactagttttcctaccagccaatacatccatcaaagtagttttaccagctccactaacacccatcaaag 2877157  T
Q  188 ctgtgagaacagccggtctgaatgaaccact 218  Q
    ||||||||||| | ||||| |||| ||||||    
T  2877156 ctgtgagaacaccaggtctaaatgcaccact 2877126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 46451799 - 46451752
Alignment:
Q  124 gtttttcttccagctagtacatccatcagagttgttttgccagcacca 171  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||||||    
T  46451799 gtttttcttccagctaatacatccatcagagtggttttcccagcacca 46451752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University