View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1851_high_18 (Length: 240)
Name: NF1851_high_18
Description: NF1851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1851_high_18 |
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| [»] scaffold0150 (2 HSPs) |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 17999 - 17781
Alignment:
| Q |
18 |
tgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaaatgcacacgtcaaaaatcaatacctagagactagtattattta |
117 |
Q |
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| T |
17999 |
tgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaaatgcacacgttaaaaatcaatacctagagactagtattattta |
17900 |
T |
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| Q |
118 |
taagcagatttcaatggattgccgttccacaatgttattaaattgggggagatgtattacgtacagtccatcgtcatacgctgaatttgaattggaaagt |
217 |
Q |
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| T |
17899 |
taagcagatttcaatgggttgccgttccacaatgttattaaattgggggagatgtattac----actctatcgtcatacgctgaatttgaattggaaagt |
17804 |
T |
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| Q |
218 |
ccccatgcaagggatagattggt |
240 |
Q |
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| T |
17803 |
ccccatgcaagggatagattggt |
17781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 9120 - 9162
Alignment:
| Q |
19 |
gtgtcaataagaagtttgagggtcagtttggtggtggaagaag |
61 |
Q |
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| T |
9120 |
gtgtcaatgagaagtttgagggtcactttgttggtggaagaag |
9162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 17017074 - 17017281
Alignment:
| Q |
18 |
tgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaaatgcacacgtcaaaaatcaatac--ctagagactagtattatt |
115 |
Q |
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| T |
17017074 |
tgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaaatacacacgtcaaaaatcgatacctctagagac---tattatt |
17017170 |
T |
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| Q |
116 |
tataagcagatttcaatggattgccgttccacaatgttattaaattgggggagatgtattacgtacagtccatcgtcatacgctgaatttgaattggaaa |
215 |
Q |
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| T |
17017171 |
tataagcagatttcaatgggttgccgttccac----------aattgggggagatgtat----tacactccatcgtcatacgctgaatttgaattggata |
17017256 |
T |
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| Q |
216 |
gtccccatgcaagggatagattggt |
240 |
Q |
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| T |
17017257 |
gtccccatgcaagggatagattggt |
17017281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 17547511 - 17547718
Alignment:
| Q |
18 |
tgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaaatgcacacgtcaaaaatcaatac--ctagagactagtattatt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| ||||||| |
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| T |
17547511 |
tgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaaatacacacgtcaaaaatcgatacctctagagac---tattatt |
17547607 |
T |
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| Q |
116 |
tataagcagatttcaatggattgccgttccacaatgttattaaattgggggagatgtattacgtacagtccatcgtcatacgctgaatttgaattggaaa |
215 |
Q |
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| T |
17547608 |
tataagcagatttcaatgggttgccgttccac----------aattgggggagatgtat----tacactccatcgtcatacgctgaatttgaattggata |
17547693 |
T |
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| Q |
216 |
gtccccatgcaagggatagattggt |
240 |
Q |
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| T |
17547694 |
gtccccatgcaagggatagattggt |
17547718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 17020150 - 17020108
Alignment:
| Q |
19 |
gtgtcaataagaagtttgagggtcagtttggtggtggaagaag |
61 |
Q |
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| T |
17020150 |
gtgtcaataagaagtttgagggtcactttgttggtggaagaag |
17020108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 17550587 - 17550545
Alignment:
| Q |
19 |
gtgtcaataagaagtttgagggtcagtttggtggtggaagaag |
61 |
Q |
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| T |
17550587 |
gtgtcaataagaagtttgagggtcactttgttggtggaagaag |
17550545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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