View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1851_high_20 (Length: 238)
Name: NF1851_high_20
Description: NF1851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1851_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 46013539 - 46013759
Alignment:
| Q |
1 |
ccttcttggaagcctcagagaaggctggggaagcaattttcaaagcctcttgtccagcctgctgcacaatcggcaacgccgtatcgaagccaggcttcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46013539 |
ccttcttggaagcctcagagaaggctggggaagcaattttcaaagcctcttgtccagcctgctgcacaatcggcaacgccgtatcgaagccaggcttcaa |
46013638 |
T |
|
| Q |
101 |
agcactccctacagcttcagcaacacgttgtgctgagtccaaaaaaccagaaccaaccacctgaacctgatcaatagtctgctccacctaaataaaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46013639 |
agcactccctacagcttcagcaacacgttgtgctgagtccaaaaaaccagaaccaaccacctgaacctgatcaatagtctgctccacctaaataaaataa |
46013738 |
T |
|
| Q |
201 |
aaaatgcatttgtagttaaag |
221 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
46013739 |
aaaatgcatttctagttaaag |
46013759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 46247049 - 46246829
Alignment:
| Q |
1 |
ccttcttggaagcctcagagaaggctggggaagcaattttcaaagcctcttgtccagcctgctgcacaatcggcaacgccgtatcgaagccaggcttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46247049 |
ccttcttggaagcctcagagaaggctggggaagcaattttcaaagcctcttgtccagcctgctgcacaatcggcaacgccgtatcgaagccaggcttcaa |
46246950 |
T |
|
| Q |
101 |
agcactccctacagcttcagcaacacgttgtgctgagtccaaaaaaccagaaccaaccacctgaacctgatcaatagtctgctccacctaaataaaataa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46246949 |
agcactccctacagcttcagcaacacgttgtgctgagtccaaaaaaccagaaccaaccacctgaacctgatcaatagtctgctccacctaaataaaataa |
46246850 |
T |
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| Q |
201 |
aaaatgcatttgtagttaaag |
221 |
Q |
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||||||||||| ||||||||| |
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| T |
46246849 |
aaaatgcatttctagttaaag |
46246829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 46019891 - 46020110
Alignment:
| Q |
2 |
cttcttggaagcctcagagaaggctggggaagcaattttcaaagcctcttgtccagcctgctgcacaatcggcaacgccgtatcgaagccaggcttcaaa |
101 |
Q |
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||||||||| ||||||||||| ||||| ||||||| |||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
46019891 |
cttcttggacgcctcagagaaagctggagaagcaaatttcaaggcctcttgtccagcctgctgcacaattggcaacgtcgtatcgaagccaggcttcaaa |
46019990 |
T |
|
| Q |
102 |
gcactccctacagcttcagcaacacgttgtgctgagtccaaaaaaccagaaccaaccacctgaacctgatcaatagtctgctccacctaaataaaataaa |
201 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46019991 |
gcactccctacagcttcagaaacatgttgtgctgagtccaaaaaaccagaaccaaccacctgaacctgatcaatagtctgctccacctaaataaaataaa |
46020090 |
T |
|
| Q |
202 |
aaatgcatttgtagttaaag |
221 |
Q |
| |
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|||||||||| ||||||||| |
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|
| T |
46020091 |
aaatgcatttctagttaaag |
46020110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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