View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1851_high_21 (Length: 238)
Name: NF1851_high_21
Description: NF1851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1851_high_21 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6093383 - 6093620
Alignment:
| Q |
1 |
aatattccaacttattcatcccttgaacatcttcgacggtaatcacaacaccaggacatcggaggtcgaggtattgcattttgctcaaattagatagcac |
100 |
Q |
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| T |
6093383 |
aatattccaacttattcatcccttgaacatcttcaacagtaatcacaacaccaggacatcggaggtcgaggtattgcattttgctcaaattagatagcac |
6093482 |
T |
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| Q |
101 |
aaaccctgatttcatagtcaaattattgtttcttgatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaa |
200 |
Q |
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| T |
6093483 |
aaaccctgatttcatagtcaaattattgtttcttgatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaa |
6093582 |
T |
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| Q |
201 |
aatgtaatgaccaatcttgacaatgcttgtagctctcc |
238 |
Q |
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| T |
6093583 |
aatgtaatgaccaatcttgacaatgcttgtagctctcc |
6093620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 6179676 - 6179788
Alignment:
| Q |
126 |
ttgtttcttgatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaaaatgtaatgaccaatcttgacaatg |
225 |
Q |
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| T |
6179676 |
ttgttgctagatagatcaagccatttcaaattggttagtttttccaagccttgtggtgcttcctcaatggaagtaaatgaaatgatcaatcttgacaatg |
6179775 |
T |
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| Q |
226 |
cttgtagctctcc |
238 |
Q |
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| T |
6179776 |
cttgtagttctcc |
6179788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 6246509 - 6246621
Alignment:
| Q |
126 |
ttgtttcttgatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaaaatgtaatgaccaatcttgacaatg |
225 |
Q |
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||||| || |||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||||||| | || |||||||||||||||||||| |
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| T |
6246509 |
ttgttgctagatagatcaagccatttcaaattgattagtttttccaatccttgtggtgcttcctcaatggaagtttttgaaatgaccaatcttgacaatg |
6246608 |
T |
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| Q |
226 |
cttgtagctctcc |
238 |
Q |
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||||||| ||||| |
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| T |
6246609 |
cttgtagttctcc |
6246621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 6105291 - 6105387
Alignment:
| Q |
135 |
gatagatcaagccatttcaagttgattaggttttccaaaccttgtggtacttcctcaatggcacaaaatgtaatgaccaatcttgacaatgcttgta |
231 |
Q |
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|||||||||||||||||||| ||| |||| |||||||| ||| |||||| || |||||||| | | | |||||||||||||||||||||||||| |
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| T |
6105291 |
gatagatcaagccatttcaaattggttagtttttccaagcctagtggtaatttctcaatggaagtcaccgaaatgaccaatcttgacaatgcttgta |
6105387 |
T |
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