View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1851_high_23 (Length: 236)
Name: NF1851_high_23
Description: NF1851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1851_high_23 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 37073961 - 37074181
Alignment:
| Q |
16 |
acaactataacctatttttcttatgaaacaagctacgtaccctacccaaacaataagatctaaaatctaccaatttcacaaactgtttttatcatcaaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37073961 |
acaactataacctatttttcttatgaaacaagctacgtaccctacccaaacaataagatctaaaatctaccaatttcacaaactgtttttatcatcaaca |
37074060 |
T |
|
| Q |
116 |
taggaagatctcttttctatacactccaacaatttcctaagattctgattatctatcaagagaccatcatattccataaggaaaccttcagattgcttct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37074061 |
taggaagatctcttttctatacactccagcaatttcctaagattctgattatctatcaagagaccatcatattccataaggaacccttcagattgcttct |
37074160 |
T |
|
| Q |
216 |
taaaagattcaacttcaattt |
236 |
Q |
| |
|
|||||| ||| |||||||||| |
|
|
| T |
37074161 |
taaaagcttccacttcaattt |
37074181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 17429200 - 17429136
Alignment:
| Q |
154 |
aagattctgattatctatcaagagaccatcatattccataaggaaaccttcagattgcttcttaa |
218 |
Q |
| |
|
|||||||||||| ||| |||||||| |||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
17429200 |
aagattctgattgtcttccaagagacgatcatattccataaggaacccctcagattgctttttaa |
17429136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University