View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1851_high_29 (Length: 232)
Name: NF1851_high_29
Description: NF1851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1851_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 6093795 - 6094010
Alignment:
| Q |
1 |
ttcatttatgatcatagtggacaacatcggacaatatggtgacatttcctctgagatttcttctatatcacaatcatacatatgaaccaactctaaatca |
100 |
Q |
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| T |
6093795 |
ttcatttatgatcatagtggatatcatcggacaatatggtgacatgtcctctgagatttcttctatatcacaatcatacatatgaaccaactctaaatca |
6093894 |
T |
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| Q |
101 |
gttttcaattcttgcacgagtgatatctttgtcaatctgctatttaatttcaccataacattcctcccactctctttcaaaatataacatgccatatcta |
200 |
Q |
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| T |
6093895 |
gttttcaattcttgcacgagtgatatctttgtcaatctgctatttaatttcaccataacattcctcccactctctttaaaaatataacatgccatatcta |
6093994 |
T |
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| Q |
201 |
tcatcaagcgatgtgt |
216 |
Q |
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| T |
6093995 |
tcatcaagcgatgtgt |
6094010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 6179966 - 6180065
Alignment:
| Q |
4 |
atttatgatcatagtggacaacatcggacaatatggtgacatttcctctgagatttcttctatatcacaatcatacatatgaaccaactctaaatcagtt |
103 |
Q |
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| T |
6179966 |
atttataatcaaggtggacagcttcggacaatcaggtgacatgccctctgggatttcttctagatcacaatcttgcatatgaaccaactctaaatcagtt |
6180065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 6105589 - 6105671
Alignment:
| Q |
21 |
acaacatcggacaatatggtgacatttcctctgagatttcttctatatcacaatcatacatatgaaccaactctaaatcagtt |
103 |
Q |
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| T |
6105589 |
acaacttcggacaattaggtgacatgccttctgggatttcttctatgtcataatcccgcatatgaaccaactctaaatcagtt |
6105671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 6207533 - 6207615
Alignment:
| Q |
21 |
acaacatcggacaatatggtgacatttcctctgagatttcttctatatcacaatcatacatatgaaccaactctaaatcagtt |
103 |
Q |
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| T |
6207533 |
acaacttcggacaattaggtgacatgccttctgggatttcttctatgtcataatcccgcatatgaaccaactctaaatcagtt |
6207615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 6233951 - 6234033
Alignment:
| Q |
21 |
acaacatcggacaatatggtgacatttcctctgagatttcttctatatcacaatcatacatatgaaccaactctaaatcagtt |
103 |
Q |
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| T |
6233951 |
acaacttcggacaattaggtgacatgccttctgggatttcttctatgtcataatcccgcatatgaaccaactctaaatcagtt |
6234033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 6088561 - 6088627
Alignment:
| Q |
146 |
aatttcaccataacattcctcccactctctttcaaaatataacatgccatatctatcatcaagcgat |
212 |
Q |
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| T |
6088561 |
aatttcaccatagcatttcgcttactctctttcatgatataacatgccatgtctatcaccaagcgat |
6088627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 6236858 - 6236911
Alignment:
| Q |
50 |
tctgagatttcttctatatcacaatcatacatatgaaccaactctaaatcagtt |
103 |
Q |
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|||| |||||||||||| ||| |||| ||||||||||||||||||||||||| |
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| T |
6236858 |
tctgggatttcttctatgtcataatcccgcatatgaaccaactctaaatcagtt |
6236911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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