View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1851_high_3 (Length: 533)
Name: NF1851_high_3
Description: NF1851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1851_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 200 - 524
Target Start/End: Original strand, 47265752 - 47266076
Alignment:
| Q |
200 |
aaatatttgattgagattcgatgtttttgtgcttagatggagacaaagagaagaccaatgaaggattacatggatatagttcagagagacattgatccaa |
299 |
Q |
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| T |
47265752 |
aaatatttgatcgagattcgatgtttttgtacttagatggagacaaagagaagaccaatgaaggattacatggatatagttcagagagacattgatccaa |
47265851 |
T |
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| Q |
300 |
aaatgagaggaatattgattgattggttagtagaagttgttgaagaatacaagcttcaaaacgatacacttcatcgcgctgtttcatacatagataggtt |
399 |
Q |
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| T |
47265852 |
aaatgagaggaatattgattgattggttagtagaagttgttgaagaatacaagcttcaaaacgatacacttcatcgcgctgtttcatacatagataggtt |
47265951 |
T |
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| Q |
400 |
cctatcttattaccctatctgtagggtcaagcttcaattgctgggtgtttcatccatgtacattgcatcgtaagccttctatacccgctttgaattttgt |
499 |
Q |
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| T |
47265952 |
cctatcttattaccctatctgtagggtcaagcttcaattgctgggtgtttcatccatgtacattgcatcgtaagccttctatacccgctttgaattttgt |
47266051 |
T |
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| Q |
500 |
gaatgatttttctttttatattctt |
524 |
Q |
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| T |
47266052 |
gaatgatttttctttttattttctt |
47266076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 47265534 - 47265704
Alignment:
| Q |
21 |
actgttcctcaaactctgccaactgcgtccgataagaccaatagcattggtgaagaatcaactacccatgaaaagtttgatgctcctgttgtttccagtg |
120 |
Q |
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| T |
47265534 |
actgttcctcaaactctgccaactgcgtccgagaagaccaatagcattggtgaagaatcaactacccatgaaaagtttgatgctcctgttgtttccagtg |
47265633 |
T |
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| Q |
121 |
cttataactatcttcgatccatcgaggtaatcttatgggtctttacacactatttcaaaattgtatatata |
191 |
Q |
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| T |
47265634 |
cttataactatcttcgatccatcgaggtaatcttatgggtctttacacactatttcaaaattgtatatata |
47265704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 231 - 479
Target Start/End: Original strand, 47258414 - 47258662
Alignment:
| Q |
231 |
cttagatggagacaaagagaagaccaatgaaggattacatggatatagttcagagagacattgatccaaaaatgagaggaatattgattgattggttagt |
330 |
Q |
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| T |
47258414 |
cttagttggaggaaaagagaagaccaatgaaggattacatggagatacttcagagatacattactccagaattgagaggaaaattggtggattggttagt |
47258513 |
T |
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| Q |
331 |
agaagttgttgaagaatacaagcttcaaaacgatacacttcatcgcgctgtttcatacatagataggttcctatcttattaccctatctgtagggtcaag |
430 |
Q |
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| T |
47258514 |
agaagttgctgaagaatacaagcttcataatgatacacttcatcttgctgtatcatacatagatatattcctatcttctcaccctatcagaaggatcaac |
47258613 |
T |
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| Q |
431 |
cttcaattgctgggtgtttcatccatgtacattgcatcgtaagccttct |
479 |
Q |
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| T |
47258614 |
cttgaattgttgggtgtttcatccttctacattgcatcgtaagccttct |
47258662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 475
Target Start/End: Complemental strand, 47249767 - 47249720
Alignment:
| Q |
428 |
aagcttcaattgctgggtgtttcatccatgtacattgcatcgtaagcc |
475 |
Q |
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| T |
47249767 |
aagcttcagttgctcggtgtttcatccatgctcattgcatcgtaagcc |
47249720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 473
Target Start/End: Complemental strand, 47242938 - 47242893
Alignment:
| Q |
428 |
aagcttcaattgctgggtgtttcatccatgtacattgcatcgtaag |
473 |
Q |
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| T |
47242938 |
aagcttcagttgcttggtgtttcatccatgctcattgcatcgtaag |
47242893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 473
Target Start/End: Complemental strand, 47254195 - 47254150
Alignment:
| Q |
428 |
aagcttcaattgctgggtgtttcatccatgtacattgcatcgtaag |
473 |
Q |
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| T |
47254195 |
aagcttcaattgcttggtgtttcatccatgctcatcgcatcgtaag |
47254150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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