View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1851_low_1 (Length: 682)

Name: NF1851_low_1
Description: NF1851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1851_low_1
NF1851_low_1
[»] chr4 (1 HSPs)
chr4 (1-673)||(42446891-42447563)


Alignment Details
Target: chr4 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 1 - 673
Target Start/End: Complemental strand, 42447563 - 42446891
Alignment:
Q  1 tggaacttctggtgttttgatgatttacatgttatatttcttccgatatgttttgtcattatttttagtttgttccaagtttgtattccatgtgttttcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42447563 tggaacttctggtgttttgatgatttacatgttatatttcttccgaaatgttttgtcattatttttagtttgttccaagtttgtattccatgtgttttcc 42447464  T
Q  101 gaaatgtttgtaagtcactttatcaataccatataaagtaaggggttttcgtaacagttacctgcaatttttggtagtaacaaatcccacttttcttgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42447463 gaaatgtttgtaagtcactttatcaataccatataaagtaaggggttttcgtaacagttacctgcaatttttggtagtaacaaatcccacttttcttgaa 42447364  T
Q  201 atgcatgctttgttttcataataacttccgctaaaatcctgaattctttacttattcaccgtgtaaattacttgacgnnnnnnntaaacaggttaagtta 300  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  42447363 atgcatgctttgtgttcataataacttccgctaaaatcctgaattctttacttattcaccgtgtaaattacttgacgaaaaaaataaacaggttaagtta 42447264  T
Q  301 cactagtgtttcggtatttgttgaagttctaagatatggaaatgacacgttctttgagtaaattctgattctgttccccgattcacatgctcttctactt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42447263 cactagtgtttcggtatttgttgaagttctaagatatggaaatgacatgttctttgagtaaattctgattctgttccccgattcacatgctcttctactt 42447164  T
Q  401 ctagtgttggtgtactctaatcagtatctttacattttgctaaatctttattaacgaagatattgtaaattaaacttcagtgtttaaactttaaacatct 500  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42447163 ctagtgttggtgtactctaatcattatctttacattttgctaaatctttattaacgaagatattgtaaattaaacttcagtgtttaaactttaaacatct 42447064  T
Q  501 ttaaaattgatggtctaacaaatatattaaacagtcttgtatattgggctatctggaaagttgctgataatgatagagaccaaagtatcttgtatctatc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42447063 ttaaaattgatggtctaacaaatatattaaacagtcttgtatattgggctatctggaaagttgctgataatgatagataccaaagtatcttgtatctatc 42446964  T
Q  601 catgcatatttctggcgaggcataattatcatgagcattttaatcccaatgtaatttgtttttggagaattat 673  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42446963 catgcatatttctggcgaggcataattatcatgagcattttaatcccaatgtaatttgtttttggagaattat 42446891  T

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