View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1851_low_10 (Length: 419)
Name: NF1851_low_10
Description: NF1851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1851_low_10 |
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| [»] scaffold0352 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 35367944 - 35367704
Alignment:
| Q |
1 |
tgtttttgagtttgagttgaagcttgttgtgttatggataatttctagaagaatgcagcgaagacaa-annnnnnnnnnnnnnnnaaaagaacgccgtga |
99 |
Q |
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| T |
35367944 |
tgtttttgggtttgagttgaagcttgttgtgttctggataatttctagaagaatatagtgaagacaatatttttttttcttttttaaaagaacgccgtga |
35367845 |
T |
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| Q |
100 |
agaagatgaaaagtggagaaataaacaagtagatgatgattttgatcaatttttattaatgtttaatcactttctattttgatgcatgaagaggagatga |
199 |
Q |
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| T |
35367844 |
agaagatgaaaagtggaaaaataaacaagtagatgatgattttgatcaatttttattaatgtttaatccctttctattttgatgcatgaagaggagatga |
35367745 |
T |
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| Q |
200 |
atttgagagttaggatgagattgaagattatgatgaacacg |
240 |
Q |
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| T |
35367744 |
atttgagagttaggatgagattgaagattatgatgaacacg |
35367704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 85 - 240
Target Start/End: Original strand, 5604 - 5759
Alignment:
| Q |
85 |
aaaagaacgccgtgaagaagatgaaaagtggagaaataaacaagtagatgatgattttgatcaatttttattaatgtttaatcactttctattttgatgc |
184 |
Q |
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| T |
5604 |
aaaagaacgcagtgaagaagatgaaaagtggagaaataaacaagtagatgatgattttgatcaatttttattaatgtttaatccctttctattttgatgc |
5703 |
T |
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| Q |
185 |
atgaagaggagatgaatttgagagttaggatgagattgaagattatgatgaacacg |
240 |
Q |
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| T |
5704 |
atgaagaggagatggatttgagagttaggatgagattgaagactatgatgaacacg |
5759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5524 - 5574
Alignment:
| Q |
1 |
tgtttttgagtttgagttgaagcttgttgtgttatggataatttctagaag |
51 |
Q |
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| T |
5524 |
tgtttttgggtttgagttgaagcttgttgtgttcctgataatttcttgaag |
5574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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