View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1851_low_13 (Length: 295)
Name: NF1851_low_13
Description: NF1851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1851_low_13 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: scaffold0076 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 9123 - 9386
Alignment:
| Q |
14 |
agtgatttgattgattttttatttgtatgccatgacttgctagcaagattataaaaactatagtactggtttgatagatttagaatttgaaattgtctca |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9123 |
agtgatttgattgattttttatttgtatgccatgacttgctagcaagattataaaaactatagtactggtttgattgatttagaatttgaaattgtctca |
9222 |
T |
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| Q |
114 |
actccttttgcattcttcaatgcctaaatgtgtgtttaagtaattgtttcgttcacatgtctaaatcgaacaagtaacttaaaatgtaaaatatggccaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9223 |
actccttttgcattcttcaatgcctaaatgtgtgtttaagtaattgtttcgttcacatgtctaaatcgaacaagtaacttaaaatgtaaaatatggccaa |
9322 |
T |
|
| Q |
214 |
ttaattgatttcagaacaagtagcagcaggtctcttaatagaatcaggggtgcaaaagttgtta |
277 |
Q |
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||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
9323 |
ttaattgattttagaacaagtagcagcaggtcttttactagaatcaggggtgcaaaagttgtta |
9386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 45222565 - 45222296
Alignment:
| Q |
14 |
agtgatttgattgattttttatttgtatgccatgacttgctagcaagattataaaaactatagtactggtttgatagatttagaatttgaaattgtctca |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
45222565 |
agtgatttgattgattttttatttgtatgccatgacttgctagcaagattataaaaa-tatagtattggtttgattgatttagaatttgaaattgtctca |
45222467 |
T |
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| Q |
114 |
actccttttgcattcttcaatgcctaaatgtgtgtttaagtaattgtttcgttcacatgtctaaatcgaacaagtaac-ttaaaatgtaaaatatggcca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||| |||||||||||||| |
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| T |
45222466 |
actccttttgcattcttcaatgcctaaatgtgtgtttaagtaattgtttcaatcacatgtctaaatcgaacaattaactttaaaaagtaaaatatggcca |
45222367 |
T |
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| Q |
213 |
attaattgatttcagaacaagtagcagcaggtctcttaatagaatcaggggtgcaaaagttgttacagtat |
283 |
Q |
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| T |
45222366 |
attaattgattttagaacaagtagcagcaggtctcttactagaaccagtggtccaaaagttgttatagtat |
45222296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 45980689 - 45980617
Alignment:
| Q |
201 |
aaaatatggccaattaattgatttcagaacaagtagcagcaggtctcttaatagaatcaggggtgcaaaagtt |
273 |
Q |
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||||||| | ||||||||| |||| ||||||||||||| || |||||||| || || || |||| |||||||| |
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| T |
45980689 |
aaaatattgtcaattaattaattttagaacaagtagcaacaagtctcttactacaaccaagggtacaaaagtt |
45980617 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 4355338 - 4355615
Alignment:
| Q |
14 |
agtgatttgattgattttttatttgtatgccatgacttgctagcaagattataaaaactatagtactggtttgatagatttagaatttgaaattgtctca |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
4355338 |
agtgatttgattgattttttatttgtatgccatgacttgctagcaagattataaaaactatagtattggtttgattgatttagaatttgaaattgtctca |
4355437 |
T |
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| Q |
114 |
actccttttgcattcttcaatgcctaaatgtgtgtttaagtaattgtttcgttcacatgtctaaatcgaacaagtaa-cttaaaatgtaaaatatggcca |
212 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| || | |||||||||||||||| |
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| T |
4355438 |
actccttttgcattcttcattgcctaaatgtgtgtttaagtaattgttttgttcacatgtctaaattgagcaagtaatttttatatgtaaaatatggcca |
4355537 |
T |
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| Q |
213 |
attaattgatttcagaacaagtagcagcaggtctcttaatagaa----tcaggggtgcaaaagttgttacagtataat |
286 |
Q |
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| T |
4355538 |
attaattgattttagaacaagtagcagcaggtctcttactagaaccaggcaggggtgcaaaagttgctatagtataat |
4355615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 19697209 - 19697449
Alignment:
| Q |
14 |
agtgatttgattgattttttatttgtatgccatgacttgctagcaagattataaaaactatagtactggttt------gatagatttagaatttgaaatt |
107 |
Q |
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|||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| || ||| ||| |||||||||||||||||| |
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| T |
19697209 |
agtgattttattgattttttatttgtgtgtcatgacttgctagcaaggttataaaaactatagtattgattttgatttgattgatttagaatttgaaatt |
19697308 |
T |
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| Q |
108 |
gtctcaactccttttgcattcttcaatgcctaaatgtgtgtttaagtaattgtttcgttcacatgtctaaatcgaacaagtaa-cttaaaatgtaaaata |
206 |
Q |
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||||| |||| | || |||||||| |||||||||| |||||||| ||||||||||| |||||| ||||||||| || |||| || | ||||||||| |
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| T |
19697309 |
gtctccactcttgttacattcttcgatgcctaaatatgtgtttaggtaattgtttcattcacacgtctaaatcaaattcgtaatttttatttgtaaaata |
19697408 |
T |
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| Q |
207 |
tggccaattaattgatttcagaacaagtagcagcaggtctct |
248 |
Q |
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||||| ||||||| |||| || |||||||| | ||||||||| |
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| T |
19697409 |
tggcc-attaattaattttaggacaagtaggaacaggtctct |
19697449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 14207689 - 14207629
Alignment:
| Q |
103 |
aaattgtctcaactccttttgcattcttcaatgcctaaatgtgtgtttaagtaattgtttc |
163 |
Q |
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|||||||||| | |||| || |||||||||||||| |||| ||||||| |||||| ||||| |
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| T |
14207689 |
aaattgtctctattcctgttacattcttcaatgccaaaatatgtgttttagtaatggtttc |
14207629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 31407907 - 31407847
Alignment:
| Q |
103 |
aaattgtctcaactccttttgcattcttcaatgcctaaatgtgtgtttaagtaattgtttc |
163 |
Q |
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|||||||||| | |||| || |||||||||||||| |||| ||||||| |||||| ||||| |
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| T |
31407907 |
aaattgtctctattcctgttacattcttcaatgccaaaatatgtgttttagtaatggtttc |
31407847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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