View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1851_low_17 (Length: 253)

Name: NF1851_low_17
Description: NF1851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1851_low_17
NF1851_low_17
[»] chr4 (14 HSPs)
chr4 (17-252)||(39911718-39911942)
chr4 (177-252)||(46854776-46854851)
chr4 (152-233)||(48316171-48316252)
chr4 (177-252)||(52461887-52461962)
chr4 (152-250)||(30417660-30417760)
chr4 (152-207)||(52632890-52632945)
chr4 (162-207)||(19600536-19600581)
chr4 (152-233)||(40413202-40413283)
chr4 (178-247)||(42150274-42150343)
chr4 (177-233)||(29322692-29322748)
chr4 (136-210)||(31986136-31986210)
chr4 (178-250)||(27301603-27301675)
chr4 (179-219)||(45043377-45043417)
chr4 (179-219)||(54041972-54042012)
[»] chr5 (6 HSPs)
chr5 (178-252)||(35112535-35112609)
chr5 (193-252)||(8166238-8166297)
chr5 (153-219)||(28613369-28613435)
chr5 (135-210)||(6478889-6478964)
chr5 (165-252)||(12005530-12005618)
chr5 (152-252)||(22963952-22964052)
[»] chr2 (6 HSPs)
chr2 (177-252)||(6149976-6150051)
chr2 (178-233)||(16803337-16803392)
chr2 (178-233)||(16842620-16842675)
chr2 (153-233)||(9367976-9368056)
chr2 (178-233)||(7293108-7293163)
chr2 (152-209)||(21195930-21195988)
[»] chr3 (6 HSPs)
chr3 (152-250)||(32263227-32263327)
chr3 (177-248)||(40246233-40246304)
chr3 (177-252)||(46224257-46224332)
chr3 (178-250)||(45973100-45973172)
chr3 (178-252)||(6955936-6956010)
chr3 (177-219)||(55006975-55007017)
[»] chr7 (7 HSPs)
chr7 (152-233)||(38958413-38958496)
chr7 (152-207)||(43988199-43988254)
chr7 (152-233)||(36250642-36250723)
chr7 (178-219)||(47421044-47421085)
chr7 (193-253)||(29015769-29015829)
chr7 (164-209)||(33055529-33055575)
chr7 (157-229)||(33698531-33698603)
[»] scaffold0114 (1 HSPs)
scaffold0114 (177-252)||(38251-38326)
[»] chr8 (8 HSPs)
chr8 (177-250)||(34615973-34616046)
chr8 (178-233)||(12949346-12949401)
chr8 (152-209)||(4679949-4680007)
chr8 (152-253)||(43345672-43345773)
chr8 (177-233)||(42035549-42035605)
chr8 (178-252)||(13637739-13637813)
chr8 (178-252)||(13738152-13738226)
chr8 (165-252)||(11943050-11943138)
[»] chr6 (1 HSPs)
chr6 (152-219)||(3651805-3651872)
[»] chr1 (5 HSPs)
chr1 (180-219)||(4861537-4861576)
chr1 (178-220)||(17180001-17180043)
chr1 (152-209)||(39202102-39202160)
chr1 (162-207)||(50010609-50010654)
chr1 (152-204)||(32472298-32472350)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 39911942 - 39911718
Alignment:
Q  17 aatataagtagaaataaatatgtatatttatcaaacattttttatataacattctaaaaatacaaattcctatatttgttaataaatacttatatttaac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39911942 aatataagtagaaataaatatgtatatttatcaaacattttttatataacattctaaaaatacaaattcctatatttgttattaaatacttatatttaac 39911843  T
Q  117 ataagggtagttaagtcatttttagtcaatcaaacctttctttcctctcactttctcttgaaccaaacaactaaaaaatcatctcactttctattccctt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||           |    
T  39911842 ataagggtagttaagtcatttttagtcaatcaaacctttctttcctctcactttttcttaaaccaaacaactaaaaaatcatctcact-----------t 39911754  T
Q  217 tcttcttactttctttcatttgactatctttcctct 252  Q
    ||||||||||||||||| ||||||||||||||||||    
T  39911753 tcttcttactttctttcctttgactatctttcctct 39911718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 46854776 - 46854851
Alignment:
Q  177 aaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatctttcctct 252  Q
    ||||||||||| || |||||||||||||||||| || |||||||||||||||||||| ||| ||  ||||||||||    
T  46854776 aaccaaacaaccaacaaatcatctcactttctactcactttcttcttactttctttcctttaaccttctttcctct 46854851  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 48316252 - 48316171
Alignment:
Q  152 ctttctttcctctcactttctcttgaaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttc 233  Q
    ||||||||||| |||||||| ||   |||||||||||||||||||||||||||||||| || ||||||  | ||||||||||    
T  48316252 ctttctttcctttcactttcactaataccaaacaactaaaaaatcatctcactttctactcactttctattcactttctttc 48316171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 52461962 - 52461887
Alignment:
Q  177 aaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatctttcctct 252  Q
    ||||||||||  || |||||||||||||||||| || |||||||||||||||||||| ||| ||  ||||||||||    
T  52461962 aaccaaacaagcaacaaatcatctcactttctactcactttcttcttactttctttcctttaaccttctttcctct 52461887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 30417660 - 30417760
Alignment:
Q  152 ctttctttcctctc--actttctcttgaaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatctttcc 249  Q
    ||||||||||||||  |||||| ||   |||||||||| || ||||||||||| |||||| || |||||||||||||||||||| ||| ||  |||||||    
T  30417660 ctttctttcctctcttactttcactcttaccaaacaaccaacaaatcatctcattttctactcactttcttcttactttctttcctttaacattctttcc 30417759  T
Q  250 t 250  Q
    |    
T  30417760 t 30417760  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 52632890 - 52632945
Alignment:
Q  152 ctttctttcctctcactttctcttgaaccaaacaactaaaaaatcatctcactttc 207  Q
    ||||||||||| |||||||| ||   ||||||||||||||||||||||||||||||    
T  52632890 ctttctttcctttcactttcactaataccaaacaactaaaaaatcatctcactttc 52632945  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 19600536 - 19600581
Alignment:
Q  162 tctcactttctcttgaaccaaacaactaaaaaatcatctcactttc 207  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||    
T  19600536 tctcactttctcttataccaaacaactaaataatcatctcactttc 19600581  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 40413283 - 40413202
Alignment:
Q  152 ctttctttcctctcactttctcttgaaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttc 233  Q
    ||||||||||| ||||| ||  ||  |||||||||||||||||||||| ||||||| | || ||||||| | ||||||||||    
T  40413283 ctttctttcctttcactatcatttataccaaacaactaaaaaatcatcacactttccactcactttcttttcactttctttc 40413202  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 42150274 - 42150343
Alignment:
Q  178 accaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatcttt 247  Q
    ||||||||||||||||||||||||||||| |||||  |||||  | |||||| ||| ||| |||||||||    
T  42150274 accaaacaactaaaaaatcatctcactttttattcattttctattcactttcattcctttcactatcttt 42150343  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 29322692 - 29322748
Alignment:
Q  177 aaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttc 233  Q
    ||||||||||| || ||||||| |||||||||| || ||||||||||| ||||||||    
T  29322692 aaccaaacaaccaacaaatcatttcactttctactcactttcttcttattttctttc 29322748  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 31986210 - 31986136
Alignment:
Q  136 ttttagtcaatcaaacctttctttcctctcactttctcttgaaccaaacaactaaaaaatcatctcactttctat 210  Q
    ||||||||||| ||||||||||||| ||| ||||||||   || ||||||| |||||||  |||| |||||||||    
T  31986210 ttttagtcaataaaacctttctttcatcttactttctcccaaatcaaacaattaaaaaaatatcttactttctat 31986136  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 27301603 - 27301675
Alignment:
Q  178 accaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatctttcct 250  Q
    |||||||||||||| |||||||  ||||| || || |||||| || |||||||||| ||| || |||||||||    
T  27301603 accaaacaactaaacaatcatcctactttttactctctttctactcactttctttcctttaacaatctttcct 27301675  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 45043417 - 45043377
Alignment:
Q  179 ccaaacaactaaaaaatcatctcactttctattccctttct 219  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  45043417 ccaaacaactaaacaatcatctcactttccattcactttct 45043377  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 54042012 - 54041972
Alignment:
Q  179 ccaaacaactaaaaaatcatctcactttctattccctttct 219  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  54042012 ccaaacaactaaacaatcatctcactttccattcactttct 54041972  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 35112535 - 35112609
Alignment:
Q  178 accaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatctttcctct 252  Q
    |||||||||| || |||||||||||||||||| || |||||||||||||||||||| ||| || |||||||||||    
T  35112535 accaaacaaccaacaaatcatctcactttctactcactttcttcttactttctttcctttaacaatctttcctct 35112609  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 8166297 - 8166238
Alignment:
Q  193 aatcatctcactttctattccctttcttcttactttctttcatttgactatctttcctct 252  Q
    ||||||| ||||||| |||| ||||| |||||||||||||| ||| || |||||||||||    
T  8166297 aatcatcccactttccattcactttcctcttactttctttcctttaacaatctttcctct 8166238  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 28613369 - 28613435
Alignment:
Q  153 tttctttcctctcactttctcttgaaccaaacaactaaaaaatcatctcactttctattccctttct 219  Q
    |||||||||| ||||||||| |   ||||||||||||||||||||||| |||||  |||| ||||||    
T  28613369 tttctttcctttcactttctgtcataccaaacaactaaaaaatcatcttacttttcattcactttct 28613435  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 6478964 - 6478889
Alignment:
Q  135 tttttagtcaatcaaacctttcttt-cctctcactttctcttgaaccaaacaactaaaaaatcatctcactttctat 210  Q
    |||||| ||||| || ||||||||| ||||| || ||| |||  |||||||||||||||| ||||||||||||||||    
T  6478964 tttttactcaattaaccctttcttttcctcttaccttcacttctaccaaacaactaaaaa-tcatctcactttctat 6478889  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 12005618 - 12005530
Alignment:
Q  165 cactttctcttgaaccaaacaactaaaaaa-tcatctcactttctattccctttcttcttactttctttcatttgactatctttcctct 252  Q
    ||||||| |||  ||||||||||||||||| || ||| |||||| |||| |||||| || |||||| ||| ||| || |||||||||||    
T  12005618 cactttcacttataccaaacaactaaaaaaatcgtctaactttccattcactttctactcactttcattcctttaacaatctttcctct 12005530  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 252
Target Start/End: Complemental strand, 22964052 - 22963952
Alignment:
Q  152 ctttctttcctctcactttctcttgaaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatctttcctc 251  Q
    ||||||||| | |||||||| ||   ||||||||   ||| ||||||| ||||||| |||| ||||| ||||||||||| || ||| || ||||||||||    
T  22964052 ctttctttcttttcactttcactcataccaaacattcaaacaatcatcccactttccattcactttcctcttactttctctcctttaacaatctttcctc 22963953  T
Q  252 t 252  Q
    |    
T  22963952 t 22963952  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 6149976 - 6150051
Alignment:
Q  177 aaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatctttcctct 252  Q
    ||||||||||| || |||||||||||||||||| || |||||||||||||||||||| ||| ||  ||||||||||    
T  6149976 aaccaaacaaccaacaaatcatctcactttctactcactttcttcttactttctttcctttaaccttctttcctct 6150051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 16803392 - 16803337
Alignment:
Q  178 accaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttc 233  Q
    |||||||||||||||||||||| ||||||| |||| ||||||| | ||||||||||    
T  16803392 accaaacaactaaaaaatcatcacactttccattcactttcttttcactttctttc 16803337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 16842675 - 16842620
Alignment:
Q  178 accaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttc 233  Q
    |||||||||||||||||||||| ||||||| |||| ||||||| | ||||||||||    
T  16842675 accaaacaactaaaaaatcatcacactttccattcactttcttttcactttctttc 16842620  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 9367976 - 9368056
Alignment:
Q  153 tttctttcctctcactttctcttgaaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttc 233  Q
    ||||||||||  ||||||| ||   ||||||||||||||||||||||||||||| || || ||||||  | ||||||||||    
T  9367976 tttctttccttacactttcactcataccaaacaactaaaaaatcatctcactttttactctctttctattcactttctttc 9368056  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 7293163 - 7293108
Alignment:
Q  178 accaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttc 233  Q
    |||||||||||||||||||||| ||||||| | || ||||||| | ||||||||||    
T  7293163 accaaacaactaaaaaatcatcgcactttccactcactttcttttcactttctttc 7293108  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 21195930 - 21195988
Alignment:
Q  152 ctttctttcctctcactttctcttgaaccaaacaactaa-aaaatcatctcactttcta 209  Q
    |||||||||||  | |||||||||  ||||||||||||| |||||||||||||||||||    
T  21195930 ctttctttccttcctctttctcttataccaaacaactaataaaatcatctcactttcta 21195988  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 32263327 - 32263227
Alignment:
Q  152 ctttctttcctctc--actttctcttgaaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatctttcc 249  Q
    ||||||||||||||  |||||| ||   |||||||||| || |||||||||||||||||| || |||||||||||||||||||| ||| ||  |||||||    
T  32263327 ctttctttcctctcttactttcactcttaccaaacaaccaacaaatcatctcactttctactcactttcttcttactttctttcctttaacattctttcc 32263228  T
Q  250 t 250  Q
    |    
T  32263227 t 32263227  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 40246304 - 40246233
Alignment:
Q  177 aaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatctttc 248  Q
    ||||||||||| || ||||||||||| |||||| || |||||||||||||||||||| ||| ||| ||||||    
T  40246304 aaccaaacaaccaacaaatcatctcattttctactcactttcttcttactttctttcctttaactttctttc 40246233  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 46224332 - 46224257
Alignment:
Q  177 aaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatctttcctct 252  Q
    ||||||||||| || |||||||||||||||||| || |||| ||||||||||||||| ||| ||  ||||||||||    
T  46224332 aaccaaacaaccaacaaatcatctcactttctactcacttttttcttactttctttcctttaaccttctttcctct 46224257  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 45973100 - 45973172
Alignment:
Q  178 accaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatctttcct 250  Q
    |||||||||| || ||||||| |||||||||| || |||||||||||||||||||| ||| ||  ||||||||    
T  45973100 accaaacaaccaacaaatcatttcactttctactcactttcttcttactttctttcctttaaccttctttcct 45973172  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 6955936 - 6956010
Alignment:
Q  178 accaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatctttcctct 252  Q
    |||||||||||||| ||||||||| ||||| |||| |||||| || |||||| ||| ||  || |||||||||||    
T  6955936 accaaacaactaaataatcatctctctttccattcactttctactcactttcattccttcaacaatctttcctct 6956010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 55006975 - 55007017
Alignment:
Q  177 aaccaaacaactaaaaaatcatctcactttctattccctttct 219  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||    
T  55006975 aaccaaacaactaaataatcatctcactttccattcactttct 55007017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 38958496 - 38958413
Alignment:
Q  152 ctttctttcctctc--actttctcttgaaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttc 233  Q
    ||||||||||||||  |||||| ||   |||||||||| || |||||||||||||||||| || ||||||||||||||||||||    
T  38958496 ctttctttcctctcttactttcactcttaccaaacaaccaacaaatcatctcactttctactcactttcttcttactttctttc 38958413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 43988254 - 43988199
Alignment:
Q  152 ctttctttcctctcactttctcttgaaccaaacaactaaaaaatcatctcactttc 207  Q
    ||||||||||| |||||||| ||   ||||||||||||||||||||||||||||||    
T  43988254 ctttctttcctttcactttcactaataccaaacaactaaaaaatcatctcactttc 43988199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 36250642 - 36250723
Alignment:
Q  152 ctttctttcctctcactttctcttgaaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttc 233  Q
    ||||||||||| ||||| ||  ||  |||||||||||||||||||||| ||||||| | || ||||||| | ||||||||||    
T  36250642 ctttctttcctttcactatcatttataccaaacaactaaaaaatcatcacactttccactcactttcttttcactttctttc 36250723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 47421044 - 47421085
Alignment:
Q  178 accaaacaactaaaaaatcatctcactttctattccctttct 219  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  47421044 accaaacaactaaaaaatcatctcactttccattcactttct 47421085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 29015769 - 29015829
Alignment:
Q  193 aatcatctcactttctattccctttcttcttactttctttcatttgactatctttcctctc 253  Q
    |||||||||| ||||||||  |||||||||||||||||||| ||| || ||||||| ||||    
T  29015769 aatcatctcattttctattaactttcttcttactttctttcctttaacaatctttcttctc 29015829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 33055529 - 33055575
Alignment:
Q  164 tcactttctcttgaaccaaacaactaaaa-aatcatctcactttcta 209  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||||    
T  33055529 tcactttctcttataccaaacaactaaaacaatcatctcactttcta 33055575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 33698531 - 33698603
Alignment:
Q  157 tttcctctcactttctcttgaaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttc 229  Q
    |||| ||||||||||  ||  ||||||||||||||| |||||||||||||| |||| | |||| || ||||||    
T  33698531 tttcttctcactttcatttataccaaacaactaaaatatcatctcactttccattcacattctactcactttc 33698603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 38326 - 38251
Alignment:
Q  177 aaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatctttcctct 252  Q
    ||||||||||| ||  ||||||||| |||||||||| |||||||||||||||||||| ||| ||  ||||||||||    
T  38326 aaccaaacaacgaactaatcatctctctttctattcactttcttcttactttctttcctttaaccttctttcctct 38251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 34615973 - 34616046
Alignment:
Q  177 aaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatctttcct 250  Q
    ||||||||||| || |||| ||||||||||||| || |||||||||||||||||||| | | ||| ||||||||    
T  34615973 aaccaaacaaccaacaaataatctcactttctactcactttcttcttactttctttcctctaactttctttcct 34616046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 12949401 - 12949346
Alignment:
Q  178 accaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttc 233  Q
    |||||||||||||||||||||||||||||||| || ||||||  | ||||||||||    
T  12949401 accaaacaactaaaaaatcatctcactttctactctctttctattcactttctttc 12949346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 4679949 - 4680007
Alignment:
Q  152 ctttctttcctctcactttctcttgaaccaaacaactaa-aaaatcatctcactttcta 209  Q
    ||||||||||| || |||||||||  ||||||||||||| |||||||||||||||||||    
T  4679949 ctttctttcctttctctttctcttataccaaacaactaataaaatcatctcactttcta 4680007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 253
Target Start/End: Complemental strand, 43345773 - 43345672
Alignment:
Q  152 ctttctttcctctcactttctcttgaaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatctttcctc 251  Q
    ||||||||| | |||||||| ||   ||||||||   ||| ||||||| ||||||| |||| ||||| |||||||||||||| ||| || ||||||||||    
T  43345773 ctttctttcttttcactttcactcataccaaacactcaaacaatcatcccactttccattcactttcctcttactttctttcctttaacaatctttcctc 43345674  T
Q  252 tc 253  Q
    ||    
T  43345673 tc 43345672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 42035549 - 42035605
Alignment:
Q  177 aaccaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttc 233  Q
    ||||||||||||||||||||||| ||||||| | || ||||||| | ||||||||||    
T  42035549 aaccaaacaactaaaaaatcatcacactttccactcactttcttttcactttctttc 42035605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 13637739 - 13637813
Alignment:
Q  178 accaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatctttcctct 252  Q
    |||||||||||||| ||||||||||||||| |||| |||||| |  |||||| ||| ||  || |||||||||||    
T  13637739 accaaacaactaaataatcatctcactttccattcactttctacccactttcattccttcaacaatctttcctct 13637813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 13738152 - 13738226
Alignment:
Q  178 accaaacaactaaaaaatcatctcactttctattccctttcttcttactttctttcatttgactatctttcctct 252  Q
    |||||||||||||| ||||||||||||||| |||| |||||| |  |||||| ||| ||  || |||||||||||    
T  13738152 accaaacaactaaataatcatctcactttccattcactttctacccactttcattccttcaacaatctttcctct 13738226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 11943138 - 11943050
Alignment:
Q  165 cactttctcttgaaccaaacaactaaaaaa-tcatctcactttctattccctttcttcttactttctttcatttgactatctttcctct 252  Q
    ||||||| |||  ||||||||||||||||| |||||| |||||| ||||  ||||| || |||||| ||| ||| || |||||||||||    
T  11943138 cactttcacttataccaaacaactaaaaaaatcatctaactttccattcaatttctactcactttcattcttttaacaatctttcctct 11943050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 3651872 - 3651805
Alignment:
Q  152 ctttctttcctctcactttctcttgaaccaaacaactaaaaaatcatctcactttctattccctttct 219  Q
    |||||||||||||||||||| |||  |||||||||| ||| ||| |||||||||||| |||| |||||    
T  3651872 ctttctttcctctcactttcacttataccaaacaaccaaacaataatctcactttcttttccttttct 3651805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 4861537 - 4861576
Alignment:
Q  180 caaacaactaaaaaatcatctcactttctattccctttct 219  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  4861537 caaacaactaaacaatcatctcactttctattcactttct 4861576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 17180043 - 17180001
Alignment:
Q  178 accaaacaactaaaaaatcatctcactttctattccctttctt 220  Q
    |||||||||||||||||||||| ||||||| |||| |||||||    
T  17180043 accaaacaactaaaaaatcatcacactttccattcactttctt 17180001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 39202102 - 39202160
Alignment:
Q  152 ctttctttcctctcactttctcttgaaccaaacaactaa-aaaatcatctcactttcta 209  Q
    |||||||||||  | |||||||||| ||||||||||||| |||||||||| ||||||||    
T  39202102 ctttctttcctacctctttctcttgtaccaaacaactaataaaatcatcttactttcta 39202160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 50010609 - 50010654
Alignment:
Q  162 tctcactttctcttgaaccaaacaactaaaaaatcatctcactttc 207  Q
    |||||||||||| |  |||||||||||||| |||||||||||||||    
T  50010609 tctcactttctcatataccaaacaactaaataatcatctcactttc 50010654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 32472298 - 32472350
Alignment:
Q  152 ctttctttcctctcactttctcttgaaccaaacaactaaaaaatcatctcact 204  Q
    |||||||| || |||||||| |||  ||||||||||||| |||||||||||||    
T  32472298 ctttcttttctttcactttcacttttaccaaacaactaacaaatcatctcact 32472350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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