View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1851_low_24 (Length: 238)
Name: NF1851_low_24
Description: NF1851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1851_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 31960268 - 31960059
Alignment:
| Q |
11 |
tccaagaatatcgattaatatgactcataaaacaatatcacaaggtaagaaaagttaccgatacgacatcacccaatgtagttttctgcagatcaggcag |
110 |
Q |
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| T |
31960268 |
tccaagaacatcgattaatatgacgcataaaacaatatcacaaggtaagaaaagttaccgatacgacatcacccaatgtagttttctgcagatcaggcat |
31960169 |
T |
|
| Q |
111 |
agtacgagtatttctggtagctgctgactgagctatggcacccaacccaccgggctcagtatgattctttccggtagctctcatttccgcggcctgtata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31960168 |
agtacgagtatttctggtagctgctgactgagctatggcacccaacccaccgggctcagtatgattctttccggtagctctcatttccgcggcctgtata |
31960069 |
T |
|
| Q |
211 |
gcagcagcat |
220 |
Q |
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|||||||||| |
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| T |
31960068 |
gcagcagcat |
31960059 |
T |
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