View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1851_low_26 (Length: 237)
Name: NF1851_low_26
Description: NF1851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1851_low_26 |
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| [»] scaffold0150 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 17514 - 17278
Alignment:
| Q |
1 |
tatctttttaacaccttagcactcacttcatattgagtgatgtgatcatcactttatgtagaatccatctctaaagtgtggtactcacatgaatttcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
17514 |
tatctttttaacaccttagcactcacttcatattgagtgatgtgatcatcactttatgtagaatccatttctaaagtgtggtactcacatgtatttcatc |
17415 |
T |
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| Q |
101 |
taacaagagggtgtatgttagagaaagcgcaggaaagagcgtgcactcctctaaataaaaaatggatgttcaacattttatagatgaaaggagccttaaa |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17414 |
taacaagagagtgtatgttagagaaagcgcaggaaagagcgtgcactcctctaaataaaaaatggatgttcaacattttatagatgaaaggagccttaaa |
17315 |
T |
|
| Q |
201 |
cggtaaaacataagactattacttttctcaccatatt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
17314 |
cggtaaaacataagactattacttttctcaccatatt |
17278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 17547979 - 17548216
Alignment:
| Q |
1 |
tatctttttaacaccttagcactcacttcatattgagtgatgtgatcatcactttatgtagaatccatctctaaagtgtggtactcacatgaatttcatt |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| ||||||| |
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| T |
17547979 |
tatctttttaacaccttaacactcacttcatattgagtgatgtgatcatcactttatgtagaatccatttataaagtgtggtactcatatggatttcatc |
17548078 |
T |
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| Q |
101 |
taacaagagggtgtatgttagagaaagcgcaggaaagagcgtgcactcctctaaataaaaaa-tggatgttcaacattttatagatgaaaggagccttaa |
199 |
Q |
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| T |
17548079 |
taacaagagagtgtatgttagagaaagcgcaggaaagagcgtgcactgctctaaataaaaaagtggatgttcaacactttatagatgaaaggagccttaa |
17548178 |
T |
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| Q |
200 |
acggtaaaacataagactattacttttctcaccatatt |
237 |
Q |
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| T |
17548179 |
acggtaaaacataagactattacttttctcaccatatt |
17548216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 17017542 - 17017779
Alignment:
| Q |
1 |
tatctttttaacaccttagcactcacttcatattgagtgatgtgatcatcactttatgtagaatccatctctaaagtgtggtactcacatgaatttcatt |
100 |
Q |
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||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| ||||||| |
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| T |
17017542 |
tatctttttaataccttaacactcacttcatattgagtgatgtgatcatcactttatgtagaatccatttataaagtgtggtactcatatggatttcatc |
17017641 |
T |
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| Q |
101 |
taacaagagggtgtatgttagagaaagcgcaggaaagagcgtgcactcctctaaataaaaaa-tggatgttcaacattttatagatgaaaggagccttaa |
199 |
Q |
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| T |
17017642 |
taacaagagagtgtatgttagagaaagcgcaggaaagagcgtgcactgctctaaataaaaaagtggatgttcaacactttatagatgaaaggagccttaa |
17017741 |
T |
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| Q |
200 |
acggtaaaacataagactattacttttctcaccatatt |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
17017742 |
acggtaaaacataagactattacttttctcaccatatt |
17017779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 7447642 - 7447715
Alignment:
| Q |
50 |
cactttatgtagaatccatctctaaagtgtggtactcacatgaatttcatttaacaagagggtgtatgttagaga |
124 |
Q |
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| T |
7447642 |
cactttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaacaagagagtg-atgttagaga |
7447715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 46893422 - 46893496
Alignment:
| Q |
50 |
cactttatgtagaatccatctctaaagtgtggtactcacatgaatttcatttaacaagagggtgtatgttagaga |
124 |
Q |
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|||||||||| | |||||| || || ||||| ||| |||||||||||||||||| ||||| ||| ||||||||| |
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| T |
46893422 |
cactttatgtgggatccatttccaatgtgtgttacccacatgaatttcatttaataagagagtgagtgttagaga |
46893496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 864172 - 864224
Alignment:
| Q |
46 |
tcatcactttatgtagaatccatctctaaagtgtggtactcacatgaatttca |
98 |
Q |
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||||| |||||||| | |||||| ||||| ||||||||| ||||||||||||| |
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| T |
864172 |
tcatcgctttatgtgggatccatttctaatgtgtggtacccacatgaatttca |
864224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 42635416 - 42635364
Alignment:
| Q |
46 |
tcatcactttatgtagaatccatctctaaagtgtggtactcacatgaatttca |
98 |
Q |
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| T |
42635416 |
tcatcactttatgtggaatccattttcaatgtgtggtacccacatgaatttca |
42635364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 17642460 - 17642408
Alignment:
| Q |
46 |
tcatcactttatgtagaatccatctctaaagtgtggtactcacatgaatttca |
98 |
Q |
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||||||||||||||| |||||| ||||| ||||||||| |||||| |||||| |
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| T |
17642460 |
tcatcactttatgtatgatccatttctaatgtgtggtacccacatgtatttca |
17642408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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