View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1851_low_4 (Length: 515)
Name: NF1851_low_4
Description: NF1851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1851_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 9 - 500
Target Start/End: Complemental strand, 34386520 - 34386029
Alignment:
| Q |
9 |
aaaatatgaatacataaaaatggctatggtataacaaggttactatccacaattgaaactagtgacacattgaatgaacaaaaaccagtacacacattga |
108 |
Q |
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| T |
34386520 |
aaaatatgaatacagaaaaatggctatggtataacaaggttactatccacaattgaaactagtgacacattgaatgaacaaaaaccagtacacacattga |
34386421 |
T |
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| Q |
109 |
atcaacaaaaaccagtgcacacacattacacggtctgacaaacggaacagctccacaaaaatgaaaattgtaaacctccaattggctcagatttaacaaa |
208 |
Q |
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| T |
34386420 |
atcaacaaaaaccagtgcacacaaaatacacggtctgcaaaacagaacagctccacaaagatgaaaattggaaacttccaattggctcagatttaacaaa |
34386321 |
T |
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| Q |
209 |
atccaaacttgagctttcgtaacttatttaactctaaatatttggtccataaatgtcaaaccttaagactaatctgcttttaaatcctctgtctaacagt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34386320 |
atccaaacttgagctttcgtaacttatttaactctaaatatttgatccataaatgtcaaaccttaagactaatctgcttttaaatcctctgtctaacagt |
34386221 |
T |
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| Q |
309 |
gtattatactaaaatttacgtctctcaatctgtgcaaacagaaatttttcagcaatacattcaaaacacagtacctactccaaaaataagtgggtgaaaa |
408 |
Q |
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| T |
34386220 |
gtattatactaaaatttacgtctctcaatctgtgcaaacagaaaattttcagcaatacattcaaaacacagtacctactccaaaaataagtgggtgaaaa |
34386121 |
T |
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| Q |
409 |
ggggttgggaagcctaatggaaaatgtgagcaattggtatatcattccttcaaaagcatacacaaccacacctaaaccatataaataatcac |
500 |
Q |
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| T |
34386120 |
ggggttgggaagcctaatggaaaatgtgagcaattggtatatcattccttcaaaagcatacacaaccacacctaaaccatataaataatcac |
34386029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 298 - 381
Target Start/End: Original strand, 2694658 - 2694741
Alignment:
| Q |
298 |
tgtctaacagtgtattatactaaaatttacgtctctcaatctgtgcaaacagaaatttttcagcaatacattcaaaacacagta |
381 |
Q |
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| T |
2694658 |
tgtctaacagtgtattatactaaaatttatgtctctcaatctgtgtaaacagaaatttttctgcaacacattcaaaacacagta |
2694741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 500
Target Start/End: Original strand, 2694803 - 2694923
Alignment:
| Q |
380 |
tacctactccaaaaataagtgg-gtgaaaaggggt-tgggaagcctaatggaaaatgtgagcaattggtatatcattccttcaaaagcatacacaaccac |
477 |
Q |
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||||||||||||||| |||| ||||||||||| ||||| |||| ||||||||||||||||||||| |||||| |||||||||||| | || |||| |
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| T |
2694803 |
tacctactccaaaaagaagtcttgtgaaaagggggatgggacgcctcatggaaaatgtgagcaattgg--tatcataccttcaaaagcaatcgcagccac |
2694900 |
T |
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| Q |
478 |
acctaaaccatataaataatcac |
500 |
Q |
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| T |
2694901 |
acctagaccatgtaaacaatcac |
2694923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 54606132 - 54606185
Alignment:
| Q |
28 |
atggctatggtataacaaggttactatccacaattgaaactagtgacacattgaa |
82 |
Q |
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| T |
54606132 |
atggctatggtataacaag-ttactatctacaattgaaactagtgacgcattgaa |
54606185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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