View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1851_low_7 (Length: 464)
Name: NF1851_low_7
Description: NF1851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1851_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 204 - 451
Target Start/End: Complemental strand, 9752124 - 9751877
Alignment:
| Q |
204 |
ctttatgctaccatatcaaagattgaaaacaccaatcctttcacatgaagtgcatgcactagaacttgataggcttagctaatcaccctaaaagattggc |
303 |
Q |
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| T |
9752124 |
ctttatgctaccatatcaaaggttgtaaaccccaatcctttcagatgaagtgcatgtactagaacttgataggcttagctaatcaccctaaaagattggc |
9752025 |
T |
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| Q |
304 |
actcaagaatcttattctaaatgataaacctggtattgtcctcattgctgaaccttagatgaaaatagaagatttaacaagaaacatgtttgctagattg |
403 |
Q |
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| T |
9752024 |
actcaagaatcttattctaaatgataaacctggtattgtcctcattgctgaaccttagatgaaaatagaagatttaacaagaaacatgtttgctagattg |
9751925 |
T |
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| Q |
404 |
aacttcaaattgtttttaagaagattttgtttaactcaccttaaccct |
451 |
Q |
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| T |
9751924 |
aacttcaaattgtttttaagaagattttgtttaactcaccttaaccct |
9751877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 6 - 165
Target Start/End: Complemental strand, 9752322 - 9752163
Alignment:
| Q |
6 |
agtcttgggggtaacaatgttgagaatgaagaagctgaagccaggttgctagagaatttagagaaggaaccgattaaagatcaaccagttaaagatcaac |
105 |
Q |
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| T |
9752322 |
agtcttgggggtaacaatgttgagaatgaagaagctgaagccaggttgctagagaatttcgagaaggaaccgattaaagatcaaccagttaaagatcaac |
9752223 |
T |
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| Q |
106 |
cacaaagtttcgataagccatcattcaagcgggtgtctcacaaattaaagaacaagtctc |
165 |
Q |
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| T |
9752222 |
cacaaagtttcgataagccatcattcaagcaggtgtctcacaaattaaagaacaagtctc |
9752163 |
T |
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