View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1851_low_8 (Length: 457)
Name: NF1851_low_8
Description: NF1851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1851_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 8 - 440
Target Start/End: Original strand, 34962294 - 34962726
Alignment:
| Q |
8 |
gagaagcataggtaccaacaccaacatcatccatatatcactctctacttgtttatcatcttcccacattttgatcccaatggagtcacgagtgttgtca |
107 |
Q |
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| T |
34962294 |
gagaaccacaggtaccaacaccaacatcatccatatatcactctctacttgtttatcatcttcccacattttgatcccaatggagtcacgagtgttgtca |
34962393 |
T |
|
| Q |
108 |
cgcgccaccacactctcctccctccctcgtctcaacaaacttcatcgtgaacatctcaccaatggcgcttccatcctctccgtgaaatcgatcggatcag |
207 |
Q |
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| T |
34962394 |
cgcgccaccacactctcctccctccctcgtctcaacaaacttcatcgtgaacatctcaccaatggcgcttccatcctctccgtgaaatcgatcggatcag |
34962493 |
T |
|
| Q |
208 |
tctctgatggcgggaaccttgtctttggaagacaacttcgtcctgaactctgttcacctgctcttaagaaaagtggtgtactcctccgtccttgcctcgc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34962494 |
tctctgatggcgggaaccttgtctttggaagacaacttcgtcctgaactctgttcacctgctcttaagaaaagtggtgtactcctccgtccttgcctcgc |
34962593 |
T |
|
| Q |
308 |
tgctgccgatgattccgccgggtgaggtccgtttaatccgttctgacttaaaaactctgtagtgttactgtactcactaatgttgnnnnnnngtttacag |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34962594 |
cgctgccgatgattccgccgggtgaggtccgtttaatccgttctgacttaaaaactctgtagtgttactgtactcactaatgttgtttttttgtttacag |
34962693 |
T |
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| Q |
408 |
tggagagaaggttgctccggttggattctttag |
440 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34962694 |
tggagagaaggttgctccggttggattctttag |
34962726 |
T |
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