View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18520_high_3 (Length: 293)

Name: NF18520_high_3
Description: NF18520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18520_high_3
NF18520_high_3
[»] chr4 (1 HSPs)
chr4 (12-293)||(41705455-41705736)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 41705736 - 41705455
Alignment:
Q  12 atgaaccgcagtctttggtttcaatggagtctaaagggcaatgagccattgtgcatagatcggaagagggggtggaactgtgtgctacagagcatgcatg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41705736 atgaaccgcagtctttggtttcaatggagtctaaagggcaatgagccattgtgcatagatcggaagagggggtggaactgtgtgctacagagcatgcatg 41705637  T
Q  112 ggagttgcatgaaatgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttgaacggt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41705636 ggagttgcatgaaatgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttgaacggt 41705537  T
Q  212 gtgcatgggaaccaaacaagggaaattcgtgtgtccatgtagagagttatgggttgggagtggggtccgaggttgaaggaga 293  Q
    |||||||||||||||||||||  | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41705536 gtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttgggagtggggtccgaggttgaaggaga 41705455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University