View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18520_high_5 (Length: 250)
Name: NF18520_high_5
Description: NF18520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18520_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23828257 - 23828018
Alignment:
| Q |
1 |
cgcttaatgagtaataataattgcatactgcgtaaaatagcagtttagtcaaattttgttacactaaatgttatagcaccactttgtactaaatagtgta |
100 |
Q |
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| T |
23828257 |
cgcttaatgtgtaataataattgcatactgcggaaaatagcggtttagtcaaattttgttacactaaatgttatagcaccactttgtactaaatagtgta |
23828158 |
T |
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| Q |
101 |
tcacattataatagcgatttattcaaattcaactatgctattgcgccgctatagcatctatttgacaacaccgcaacagttacactattttcttcttagt |
200 |
Q |
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| T |
23828157 |
tcacataataatagcgatttattcaaattcagctatgctattgcgccgctatagcatctatttgacaacagcgcaacagttacactattttcttcttagt |
23828058 |
T |
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| Q |
201 |
tataagagttaaacttaccatgaactcgttgtgacctttg |
240 |
Q |
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| T |
23828057 |
tataagagttaaacttaccatgaacttgttgtgacctttg |
23828018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 23824223 - 23824163
Alignment:
| Q |
108 |
ataatagcgatttattcaaattcaactatgctattgcgccgctatagcatctatttgacaa |
168 |
Q |
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| T |
23824223 |
ataatagcaatttgttcaaattcagctaagctatagcgccactatagccgctatttgacaa |
23824163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 33342776 - 33342727
Alignment:
| Q |
81 |
actttgtactaaatagtgtatcacattataatagcgatttattcaaattc |
130 |
Q |
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| T |
33342776 |
actttgtacttaatagtgtatcgcataacaatagcgatttattcaaattc |
33342727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 507809 - 507723
Alignment:
| Q |
85 |
tgtactaaatagtgtatcacattataatagcgatttattcaaattcaactatgctattgcgccgctatagcatctatttgacaacac |
171 |
Q |
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|||||||||| ||||||||||| | |||||| |||||| ||||| ||||||||| ||||| ||| | || |||||||||||||| |
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| T |
507809 |
tgtactaaattgtgtatcacataacaatagcagtttattataattccgctatgctatagcgccactaaatcaactatttgacaacac |
507723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 7180716 - 7180761
Alignment:
| Q |
81 |
actttgtactaaatagtgtatcacattataatagcgatttattcaa |
126 |
Q |
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| T |
7180716 |
actttgtactaaatagtgtatcacagaacaatagcaatttattcaa |
7180761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 25314042 - 25314103
Alignment:
| Q |
80 |
cactttgtactaaatagtgtatcacattataatagcgatttattcaaattcaactatgctat |
141 |
Q |
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|||||||||| ||||||||||||||| | |||| |||||| ||||||||| ||||||||| |
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| T |
25314042 |
cactttgtaccaaatagtgtatcacagaacaataacgatttgttcaaattcctctatgctat |
25314103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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