View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18520_low_1 (Length: 446)
Name: NF18520_low_1
Description: NF18520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18520_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 6 - 437
Target Start/End: Complemental strand, 5037913 - 5037482
Alignment:
| Q |
6 |
aactacaacacaatttaaaagttttgcgtatgctagtgatcaattagctaggaccacaaatcttatttagcaagttccattgttaatttcccttttcagg |
105 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5037913 |
aactataacacaatttaaaagctttgcgtatgctagtgatcaattagctaggaccacaaatcttatttagcaagttccattgttaatttcccttttcagg |
5037814 |
T |
|
| Q |
106 |
tatttttctttgtcttcttaaaatattaagaaagagagatggtatagttcaattatttggaattatgtaatgaaagtgaaagcatattttcagcagcatt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5037813 |
tatttttctttgtcttcttaaaatattaagaaagagagatgatatagttcaattatttggaattatgtaatgaaagtgaaagcatattttcagcagc--- |
5037717 |
T |
|
| Q |
206 |
attcgacacatcaataataccatgcatgggcagcttggattcccattatatatgttagaatttagttgaagaacaaaatcatctctaaacaaaacagatt |
305 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5037716 |
attcgacacatcaataatgccatgcatgggcagcttggattcccattatatatgttagaatttagttgaagaacaaaatcatctctaaacaaaacagatt |
5037617 |
T |
|
| Q |
306 |
aatgtatgcacagaaaaatagagtaattgatcac-aaagtttgaca--nnnnnnnnnnaacattatggtgatttcaacagctgctatatatactttgtga |
402 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5037616 |
aatgtgtgcacagaaaaataaagtaattgatcacaaaagtttgacaatttttttttttaacattatggtgatttcaacagctgctagatatactttgtga |
5037517 |
T |
|
| Q |
403 |
cggttctgcaaccgtcttaaaactccaattgacat |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5037516 |
cggttctgcaaccgtcttaaaactccaattgacat |
5037482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University