View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18520_low_2 (Length: 328)
Name: NF18520_low_2
Description: NF18520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18520_low_2 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 312
Target Start/End: Original strand, 11317728 - 11318035
Alignment:
| Q |
7 |
tcgaagaatataatgttttgacgtcaggaa-caaaatctttgtagtaaagatcagactccaaaaagggaacaagaccatgaggattggtagtgagcaatg |
105 |
Q |
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| T |
11317728 |
tcgaagaagataatgttttgacgtcaagaaacaaaatctttgtagtaaagatcagactccaaaaagggaacaagaccatgaggattggtagtgagcaatg |
11317827 |
T |
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| Q |
106 |
gatggttgttcttagtatgatcaataattggatatttgtcgcgatttagcaaagc-aaaagtcaatgctttgagccatgttgtacctgattttggagtgg |
204 |
Q |
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| T |
11317828 |
gatggttgttcttagtatgatcaataattgaatatttgtcgcgatttagcaaagcaaaaagtcaatgctttaagccaagtggtgcctgcttttggagtgg |
11317927 |
T |
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| Q |
205 |
taactatgaggatatctgtatcaatggcttgaaattgcttatgacaagataaagtaccttggagaatccttgtgctaagccaaaatccttgatattgatg |
304 |
Q |
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| T |
11317928 |
taactatgaggatatcagtatcaagggcttgaaattgcttatgacaagataaagtaccttggagaatccttgtggtaagccaaaatccttgatattgatg |
11318027 |
T |
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| Q |
305 |
gaagtggg |
312 |
Q |
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| T |
11318028 |
gaagtggg |
11318035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 156 - 313
Target Start/End: Original strand, 11439455 - 11439612
Alignment:
| Q |
156 |
aaagcaaaagtcaatgctttgagccatgttgtacctgattttggagtggtaactatgaggatatctgtatcaatggcttgaaattgcttatgacaagata |
255 |
Q |
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| T |
11439455 |
aaagcaaaggttaatgctttgagccaagtggtacctgatttgggagtggtaactaagaggatatctgtattaagggcttgaaagtgtttttgacaagata |
11439554 |
T |
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| Q |
256 |
aagtaccttggagaatccttgtgctaagccaaaatccttgatattgatggaagtgggt |
313 |
Q |
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| T |
11439555 |
aaacaccttgaagaattctcgtgccaatccaaaatccttgatattgatgaaagtgggt |
11439612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 15460897 - 15460844
Alignment:
| Q |
62 |
ctccaaaaagggaacaagaccatgaggattggtagtgagcaatggatggttgtt |
115 |
Q |
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| T |
15460897 |
ctccaagaaaggaacaagaacatgagggttggtagtgagcaaaggatggttgtt |
15460844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 62 - 303
Target Start/End: Original strand, 27499340 - 27499572
Alignment:
| Q |
62 |
ctccaaaaagggaacaagaccatgaggattggtagtgagcaatggatggttgttcttagtatgatcaataattggatatttgtcgcgatttagcaaagca |
161 |
Q |
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| T |
27499340 |
ctccaagaagggaacaagagaatggggattggaaatgagcaaaggatggttgtt---------atgaataattggatatttgttgcggtttagcaaagca |
27499430 |
T |
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| Q |
162 |
aaagtcaatgctttgagccatgttgtacctgattttggagtggtaactatgaggatatctgtatcaatggcttgaaattgcttatgacaagataaagtac |
261 |
Q |
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| T |
27499431 |
aaagtcaatgctttgagccaagtggtacctgatttgggagcggtaactaagatgatatctgaatctagggcttgaaagtgcttctgacaagataaaacac |
27499530 |
T |
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| Q |
262 |
cttggagaatccttgtgctaagccaaaatccttgatattgat |
303 |
Q |
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| T |
27499531 |
cttgaaatttttttgtggcaatccaaaatccttgatattgat |
27499572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 128 - 272
Target Start/End: Complemental strand, 27504523 - 27504379
Alignment:
| Q |
128 |
aataattggatatttgtcgcgatttagcaaagcaaaagtcaatgctttgagccatgttgtacctgattttggagtggtaactatgaggatatctgtatca |
227 |
Q |
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| T |
27504523 |
aatatttggatatttgttacggtttatcaaagcaaaagtcaatgctttgagccaagtggtacctgatttgggatttgtaactaagataatatctgtatca |
27504424 |
T |
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| Q |
228 |
atggcttgaaattgcttatgacaagataaagtaccttggagaatc |
272 |
Q |
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| T |
27504423 |
atggcttgaaagtgcttttgaaaagataaagcaccttggagaatc |
27504379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 1295 - 1348
Alignment:
| Q |
62 |
ctccaaaaagggaacaagaccatgaggattggtagtgagcaatggatggttgtt |
115 |
Q |
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| T |
1295 |
ctccaagaaaggaacaagaacatgagggttggtagtgagcaaaggatggttgtt |
1348 |
T |
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