View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18520_low_3 (Length: 299)
Name: NF18520_low_3
Description: NF18520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18520_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 43473731 - 43473460
Alignment:
| Q |
13 |
aatatattgacacgaagacgataataatattttaagaaaatgtaaccacatgtgttagtgttgatatcaaagactgacacgtgtcagatacagaatgctc |
112 |
Q |
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| T |
43473731 |
aatatattgacacgaagacgataataatattttaagaaaatgtaaccacatgtgttagtgttgatatcaaagactgacacgtgtcagatacagaatgctc |
43473632 |
T |
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| Q |
113 |
cttttatttgaaatgtcggtgctacataggttgagacttacaatggtgcctcaaatgtgcagctcttggtgactccaacagctgaagtagaccttccaaa |
212 |
Q |
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| T |
43473631 |
cttttatttgaaatgtcggtgctacataggttgagacttacaatggtgcctcaaatgtgcagctcttggtgactccaacagctgaagtagaccttccaaa |
43473532 |
T |
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| Q |
213 |
ctagcacattgaatggaaatagtattatgattcatgaacatagaaaaacaatgtaagaggcaaagaagatac |
284 |
Q |
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| T |
43473531 |
ctagcacattgaatggaaatagtattatgattcatgaacatagaaaaacaatgtaagaggcaaagaagatac |
43473460 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 2081302 - 2081393
Alignment:
| Q |
135 |
tacataggttgagacttacaatggtgcctcaaatgtgcagctcttggtgactccaacagctgaagtagaccttccaaactagcacattgaat |
226 |
Q |
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| T |
2081302 |
tacatgggttgggacttacatggatgcctcagatgtgtgactcttggttaatgcaacaactaaagtagaccttccaaactagcacatagaat |
2081393 |
T |
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