View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18520_low_8 (Length: 233)
Name: NF18520_low_8
Description: NF18520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18520_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 23828277 - 23828496
Alignment:
| Q |
1 |
cgcttcatgtttgagaatatttttactagtttaatcttatcaatgtttctcaactaagctaatttcattagtggttgggaaacaagcctgtgtttggatc |
100 |
Q |
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| T |
23828277 |
cgcttcatgtttgagaatatttttactagtttaatcttatcaatgtttctcaactaagctaatttcattagtggttgggaaacaagcctgtgtttggatc |
23828376 |
T |
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| Q |
101 |
cacattgggttagcaaatctcgcgtcccaatgtaagttgaccgtgagtcggctcatgaagctgcaaagcaaagcttttacgcagcctcgcggtgtaacag |
200 |
Q |
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| T |
23828377 |
cacattgggttagcaaatctcgcgtcccaatgtaagttgaccgtgagtcggctcatgaagctgcaaagcaaagcttttacgcagcctcgcggtgtaacag |
23828476 |
T |
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| Q |
201 |
caatttcattaaattccaaa |
220 |
Q |
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| T |
23828477 |
caatttcattaaattccaaa |
23828496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 220
Target Start/End: Original strand, 23824381 - 23824553
Alignment:
| Q |
44 |
tgtttctcaactaagctaatttcattagtggttgggaaac-aagcctgtgtttggatccacattgggttagcaaatctcgcgtcccaatgtaagttgacc |
142 |
Q |
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| T |
23824381 |
tgtttctttactaagctaattttaccaatggttgggaaactaagcctgtgtttggatccgcatt-ggtcagaaaatttaacgtcccaatgtaagtt-aac |
23824478 |
T |
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| Q |
143 |
gtgagtcggctcatgaagctgcaaagcaaagcttttacgcagcctcgcggtgtaacagcaatttcattaaattccaaa |
220 |
Q |
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| T |
23824479 |
atgaat---ctcatgaagctgcaaagtgaagcttttagtcagtctcgctgggtaaccacgatttcattaaaatccaaa |
23824553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 23832261 - 23832338
Alignment:
| Q |
6 |
catgtttgagaatatttttactagtttaatcttatcaatgtttctcaactaagctaatttcattagtggttgggaaac |
83 |
Q |
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|||||| |||||| ||||||| |||||||||||| || |||||| |||||||||| ||||||||||||||||| |
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| T |
23832261 |
catgttcgagaatgtttttacatgtttaatcttatttatatttctctgtaaagctaattttattagtggttgggaaac |
23832338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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