View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18520_low_9 (Length: 219)

Name: NF18520_low_9
Description: NF18520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18520_low_9
NF18520_low_9
[»] chr3 (13 HSPs)
chr3 (1-205)||(22457829-22458033)
chr3 (1-205)||(22480810-22481014)
chr3 (1-205)||(22467291-22467495)
chr3 (1-205)||(22435971-22436175)
chr3 (17-205)||(22629786-22629971)
chr3 (10-205)||(22353155-22353347)
chr3 (3-159)||(22357388-22357544)
chr3 (1-105)||(22634946-22635050)
chr3 (1-159)||(22442128-22442286)
chr3 (3-159)||(22430556-22430712)
chr3 (12-205)||(22367264-22367457)
chr3 (28-156)||(22656443-22656571)
chr3 (11-106)||(37930298-37930394)
[»] chr7 (2 HSPs)
chr7 (33-107)||(872150-872224)
chr7 (33-107)||(1233427-1233501)
[»] chr1 (3 HSPs)
chr1 (28-160)||(34976332-34976464)
chr1 (28-160)||(34983443-34983575)
chr1 (8-50)||(2304969-2305011)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 22458033 - 22457829
Alignment:
Q  1 gtttcaattagtattgatggaagatcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaaga 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  22458033 gtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgatctggtgcatgcattgatccttgaaaaatgtgaagaattaagtttttgcaaga 22457934  T
Q  101 atattagcgaggatgaccaatcatctttaagtgggatggttcgacgcctatcaatagcaatcagatctgataatttcatggaaaatattgaaaactcaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||    
T  22457933 atattagcgaggatgaccaatcatctttaagtgggatggttcgacgcctatcaatagcaatcagatttgacaatttgatggaaaatattgaaaactcaca 22457834  T
Q  201 ggttc 205  Q
    |||||    
T  22457833 ggttc 22457829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 22481014 - 22480810
Alignment:
Q  1 gtttcaattagtattgatggaagatcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaaga 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  22481014 gtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgatctggtgcatgcattgatccttgaaaaatgtgaagaattaagtttttgcaaga 22480915  T
Q  101 atattagcgaggatgaccaatcatctttaagtgggatggttcgacgcctatcaatagcaatcagatctgataatttcatggaaaatattgaaaactcaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||    
T  22480914 atattagcgaggatgaccaatcatctttaagtgggatggttcgacgcctatcaatagcaatcagatttgacaatttgatggaaaatattgaaaactcaca 22480815  T
Q  201 ggttc 205  Q
    |||||    
T  22480814 ggttc 22480810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 22467495 - 22467291
Alignment:
Q  1 gtttcaattagtattgatggaagatcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaaga 100  Q
    |||||||| |||||||||||||||  |||||||||| |||||||||||||||| |||||| |||||||||| |||| ||| || ||||||||||||||||    
T  22467495 gtttcaataagtattgatggaagagtaaaaagttgtcgtgttcatgatctagtgcatgcaatgatccttgataaatatgaggatttaagtttttgcaaga 22467396  T
Q  101 atattagcgaggatgaccaatcatctttaagtgggatggttcgacgcctatcaatagcaatcagatctgataatttcatggaaaatattgaaaactcaca 200  Q
    ||||||  |||||  | ||||  ||||||| ||| ||| |||||||||||||||||| ||  |  ||||||||||| ||| ||  |||||||||||||||    
T  22467395 atattactgaggacaaacaattgtctttaactggaatgattcgacgcctatcaatagaaactacctctgataatttaatgaaagttattgaaaactcaca 22467296  T
Q  201 ggttc 205  Q
     ||||    
T  22467295 tgttc 22467291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 22436175 - 22435971
Alignment:
Q  1 gtttcaattagtattgatggaagatcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaaga 100  Q
    |||||||| |||||||||||||||  |||||||||| ||||||||||| |||| |||||| |||||||||| |||| ||| || ||||||||||||||||    
T  22436175 gtttcaataagtattgatggaagagtaaaaagttgtcgtgttcatgatttagtgcatgcaatgatccttgagaaatatgaggatttaagtttttgcaaga 22436076  T
Q  101 atattagcgaggatgaccaatcatctttaagtgggatggttcgacgcctatcaatagcaatcagatctgataatttcatggaaaatattgaaaactcaca 200  Q
    ||||||  |||||  | ||||  ||||||| | |  ||  ||||||||||||||| |||| ||| ||| ||||| | ||||||  |||||||| ||||||    
T  22436075 atattactgaggacaatcaattttctttaactagagtgactcgacgcctatcaatggcaaccagttcttataatctaatggaaggtattgaaagctcaca 22435976  T
Q  201 ggttc 205  Q
     ||||    
T  22435975 tgttc 22435971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 22629971 - 22629786
Alignment:
Q  17 atggaagatcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatga 116  Q
    ||||||||  |||||||||| |||| ||||||||||| |||||| |||||||||| |||| ||| || ||||||||||||||||||||||  |||||  |    
T  22629971 atggaagagtaaaaagttgtcgtgtacatgatctagtgcatgcaatgatccttgagaaatatgaggatttaagtttttgcaagaatattattgaggacaa 22629872  T
Q  117 ccaatcatctttaagtgggatggttcgacgcctatcaatagcaatcagatctgataatttcatggaaaatattgaaaactcacaggttc 205  Q
     ||||  ||||||| ||| ||| || ||||||||||||||||||  |   |||||||||| ||| ||| ||||||||||||||| ||||    
T  22629871 gcaattgtctttaactggaatgatttgacgcctatcaatagcaacta---ctgataatttaatgaaaagtattgaaaactcacatgttc 22629786  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 22353347 - 22353155
Alignment:
Q  10 agtattgatggaagatcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcg 109  Q
    |||||||||||||||  |||||||||| ||||||| |||||||| |||| | ||||||||  ||||| ||| || |||||||||||||||||||||| ||    
T  22353347 agtattgatggaagagtaaaaagttgtcgtgttcacgatctagtgcatgaaatgatccttagaaaatatgaggatttaagtttttgcaagaatatta-cg 22353249  T
Q  110 aggatgaccaatcatctttaagtgggatggttcgacgcctatcaatagcaatcagatctgataatttcatggaaaatattgaaaactcacaggttc 205  Q
    || |  | |||   || |||| ||| ||| || ||||||||||||||||||  || |||||||| || ||| ||| ||||||||||||||| ||||    
T  22353248 agca--aacaactgtcattaactggaatgatttgacgcctatcaatagcaactagttctgataagttaatgaaaagtattgaaaactcacatgttc 22353155  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 22357544 - 22357388
Alignment:
Q  3 ttcaattagtattgatggaagatcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaat 102  Q
    |||||| |||||||||||||||  |||| ||||| |||||||||||||||| |||| | ||||||||||||||  | |  | ||||| |||||| |||||    
T  22357544 ttcaatcagtattgatggaagagtaaaacgttgtcgtgttcatgatctagtgcatgaaatgatccttgaaaaacataagcatttaagcttttgcgagaat 22357445  T
Q  103 attagcgaggatgaccaatcatctttaagtgggatggttcgacgcctatcaatagca 159  Q
    ||||  ||||   | ||||  ||||||| ||| ||| ||||||||||||||||||||    
T  22357444 attactgagggcaaacaattgtctttaactggaatgattcgacgcctatcaatagca 22357388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 22635050 - 22634946
Alignment:
Q  1 gtttcaattagtattgatggaagatcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaaga 100  Q
    ||||||| ||||||||||||||||  |||||||||  | |||||||||||||| |||| | |||||||||| |||| | | || ||||||||||||||||    
T  22635050 gtttcaactagtattgatggaagagtaaaaagttgccgcgttcatgatctagtgcatgaaatgatccttgacaaatttaaggatttaagtttttgcaaga 22634951  T
Q  101 atatt 105  Q
    |||||    
T  22634950 atatt 22634946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 22442286 - 22442128
Alignment:
Q  1 gtttcaattagtattgatggaagatcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaaga 100  Q
    |||||||  |||||||||||||||  |||||||||  |||||||||||||||| |||| | ||||||||||||||  | |  | ||||| |||||| |||    
T  22442286 gtttcaaccagtattgatggaagagtaaaaagttgccgtgttcatgatctagtgcatgaaatgatccttgaaaaacataagcatttaagcttttgcgaga 22442187  T
Q  101 atattagcgaggatgaccaatcatctttaagtgggatggttcgacgcctatcaatagca 159  Q
    ||||||  ||||   | ||||  ||||||| ||| ||| ||||||||||||||||||||    
T  22442186 atattactgagggaaaacaattgtctttaactggaatgattcgacgcctatcaatagca 22442128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 22430712 - 22430556
Alignment:
Q  3 ttcaattagtattgatggaagatcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaat 102  Q
    |||||| |||||||||||||||  || ||||||| |||||||||||||||| |||| | |||||||| |||||| ||| || ||||| ||||| ||| ||    
T  22430712 ttcaataagtattgatggaagagtaagaagttgtcgtgttcatgatctagtgcatgaaatgatccttaaaaaatatgaggatttaagcttttgtaagtat 22430613  T
Q  103 attagcgaggatgaccaatcatctttaagtgggatggttcgacgcctatcaatagca 159  Q
    || | |||| |  | ||||  | ||||| ||| ||| ||| ||||||||||||||||    
T  22430612 atcaccgagaacaatcaattgtatttaactggaatgattcaacgcctatcaatagca 22430556  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 22367457 - 22367264
Alignment:
Q  12 tattgatggaagatcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgag 111  Q
    |||||||||||||  | | |||||  |||||||||||||||| |||||| |||||||| | |||  ||| || ||||| |||||||||| ||||| ||||    
T  22367457 tattgatggaagagtagacagttgccgtgttcatgatctagtgcatgcaatgatccttaataaacatgaggatttaagcttttgcaagagtattaccgag 22367358  T
Q  112 gatgaccaatcatctttaagtgggatggttcgacgcctatcaatagcaatcagatctgataatttcatggaaaatattgaaaactcacaggttc 205  Q
    ||    ||||   ||| || ||| ||| ||||||||||||||||||||   || ||||||||| | ||||||  |||||||| |||||| ||||    
T  22367357 gacagacaattgccttcaactggaatgattcgacgcctatcaatagcatcaagttctgataatctaatggaaggtattgaaagctcacatgttc 22367264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 22656571 - 22656443
Alignment:
Q  28 aaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctt 127  Q
    |||||||||||||| |||||| || | |||    ||||||||||||| ||||| || |||||||| |||||| ||||||| |  |||| ||| ||||||     
T  22656571 aaaagttgttgtgtccatgatttaatacatatgatgatccttgaaaagtgtgaggatttaagtttctgcaagcatattagtgcagatggccattcatcta 22656472  T
Q  128 taagtgggatggttcgacgcctatcaata 156  Q
    ||||||| ||  |||||||||||||||||    
T  22656471 taagtggaattattcgacgcctatcaata 22656443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 37930394 - 37930298
Alignment:
Q  11 gtattgatggaagatcaaaaagttgttgtgttcatgatctagtccatgcattgatcctt-gaaaaatgtgaagaattaagtttttgcaagaatatta 106  Q
    ||||||||||||||  |||||||||| |||||||||||||||| |||| | |||||||| || |||| |   || |||||||||||| |||||||||    
T  37930394 gtattgatggaagagtaaaaagttgtcgtgttcatgatctagtgcatgaaatgatcctttgacaaatttatggatttaagtttttgcgagaatatta 37930298  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 872224 - 872150
Alignment:
Q  33 ttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattag 107  Q
    |||| |||||||||||||| | ||||  |||||||||||||||| ||| || |||| |||||||||| |||||||    
T  872224 ttgtcgtgttcatgatctactacatgatttgatccttgaaaaatttgaggatttaaatttttgcaagcatattag 872150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 1233501 - 1233427
Alignment:
Q  33 ttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattag 107  Q
    |||| |||||||||||||| | ||||  |||||||||||||||| ||| || |||| |||||||||| |||||||    
T  1233501 ttgtcgtgttcatgatctactacatgatttgatccttgaaaaatttgaggatttaaatttttgcaagcatattag 1233427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 160
Target Start/End: Original strand, 34976332 - 34976464
Alignment:
Q  28 aaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctt 127  Q
    |||||||||||||||||||||||  | | |    ||||||||||||| ||||| || ||||||||||||||| || | |  || ||||  || |||||||    
T  34976332 aaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctt 34976431  T
Q  128 taagtgggatggttcgacgcctatcaatagcaa 160  Q
    ||||||| |   || ||||||||||||||||||    
T  34976432 taagtggaactattagacgcctatcaatagcaa 34976464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 160
Target Start/End: Original strand, 34983443 - 34983575
Alignment:
Q  28 aaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctt 127  Q
    |||||||||||||||||||||||  | | |    ||||||||||||| ||||| || ||||||||||||||| || | |  || ||||  || |||||||    
T  34983443 aaaagttgttgtgttcatgatctgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctt 34983542  T
Q  128 taagtgggatggttcgacgcctatcaatagcaa 160  Q
    ||||||| |   || ||||||||||||||||||    
T  34983543 taagtggaactattagacgcctatcaatagcaa 34983575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 2305011 - 2304969
Alignment:
Q  8 ttagtattgatggaagatcaaaaagttgttgtgttcatgatct 50  Q
    |||| |||||||||| ||| |||||||||||||||||||||||    
T  2305011 ttagcattgatggaaaatctaaaagttgttgtgttcatgatct 2304969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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