View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_high_12 (Length: 375)
Name: NF18521_high_12
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 4111023 - 4110661
Alignment:
| Q |
1 |
gaaactttggaagcagaaagagccattagagaagaataacgaaaagggtcgttgagaaatgattga---agga----aggaagagaaatggttaacaatg |
93 |
Q |
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| T |
4111023 |
gaaactttggaagcagaaagagccattagagaagaataacgaaaagggtcgttgagaaa--attgagaaaggattgaaggaagagaaatggttaacaatg |
4110926 |
T |
|
| Q |
94 |
gcggctttgtgtggttgtgaagagggtgagggacaaaggtgatataagtagtgatggagaagggtaatatggggatatgaaattaatgtggatcgttgga |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4110925 |
gcggctttgtgtggttgtgaagagggtgagggacaaaggtgatataagtagtgatggagaagggtaatatggggatatgaaattaatgtggatcgttgga |
4110826 |
T |
|
| Q |
194 |
tgagttttgacgtggagggttgagatttaaagagaagaagaggcgtgtggcgagctcgtggcctaatgtagtgtgaacatgaaaagtaggaaatatccga |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4110825 |
tgagttttgacgtggagggttgagatttaaagagaagaagaggcgtgtggcgagctcgtggcctaatgtagtgtgaacatgaaaagtaggaaatatccga |
4110726 |
T |
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| Q |
294 |
tccacgtagtaatcaagtattgatcttcattttcggtccaattattgttgcctcactcgctctat |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4110725 |
tccacgtagtaatcaagtattgatcttcattttcggtccaattattgttgcctcactcgctctat |
4110661 |
T |
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