View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18521_high_20 (Length: 303)

Name: NF18521_high_20
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18521_high_20
NF18521_high_20
[»] chr6 (10 HSPs)
chr6 (13-287)||(26654648-26654927)
chr6 (13-287)||(26760618-26760897)
chr6 (121-249)||(27339638-27339767)
chr6 (121-249)||(27400378-27400507)
chr6 (13-94)||(27339283-27339364)
chr6 (13-94)||(27400023-27400104)
chr6 (173-249)||(27334389-27334466)
chr6 (173-249)||(27395129-27395206)
chr6 (13-69)||(27593746-27593802)
chr6 (13-69)||(27678268-27678324)
[»] chr1 (2 HSPs)
chr1 (121-249)||(28164750-28164872)
chr1 (114-249)||(28128883-28129012)


Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 26654927 - 26654648
Alignment:
Q  13 aatatgacctcttgaactaaatgattaattaatcatgcacacacaattattagtgtaagttgcaatattgaatgcttaattatacaattgtaacataatt 112  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26654927 aatatgacctcttgaactaaatgattaattaaccatgcacacacaattattagtgtaagttgcaatattgaatgcttaattatacaattgtaacataatt 26654828  T
Q  113 tgttagttaacaagattagggtagcatagatctgaaatattatttctttcatatattttctcaagttttggctaccaaagtcaacac-----ttttacta 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  26654827 tgttagttaacaagattagggtagcatagatctgaaatattatttctttcatatattttctcaagttttggctaccaaagtcaacactttaattttacta 26654728  T
Q  208 ccatgtcaagtccgaaacttccttctcattttccatgtggactctttcctttgaattttctacatctgtacccatcaatg 287  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  26654727 ccatgtcaagtccgaaacttccttctcatcttccatgtggacactttcctttaaattttctacatctgtacccatcaatg 26654648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 26760897 - 26760618
Alignment:
Q  13 aatatgacctcttgaactaaatgattaattaatcatgcacacacaattattagtgtaagttgcaatattgaatgcttaattatacaattgtaacataatt 112  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26760897 aatatgacctcttgaactaaatgattaattaaccatgcacacacaattattagtgtaagttgcaatattgaatgcttaattatacaattgtaacataatt 26760798  T
Q  113 tgttagttaacaagattagggtagcatagatctgaaatattatttctttcatatattttctcaagttttggctaccaaagtcaacac-----ttttacta 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  26760797 tgttagttaacaagattagggtagcatagatctgaaatattatttctttcatatattttctcaagttttggctaccaaagtcaacactttaattttacta 26760698  T
Q  208 ccatgtcaagtccgaaacttccttctcattttccatgtggactctttcctttgaattttctacatctgtacccatcaatg 287  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  26760697 ccatgtcaagtccgaaacttccttctcatcttccatgtggacactttcctttaaattttctacatctgtacccatcaatg 26760618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 121 - 249
Target Start/End: Original strand, 27339638 - 27339767
Alignment:
Q  121 aacaagattagggtagcatagatctgaaatattatttctttcatatattttctcaagttttggctaccaaagtcaacacttttactac--catgtcaagt 218  Q
    ||||||||||||||| ||||||| ||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||  |||||  |||    
T  27339638 aacaagattagggtaacatagatatgaaatattctttccttcatttattttctcaagttttggctacc-aagtcaacacttttactaccgcatgttgagt 27339736  T
Q  219 ccgaaacttccttctcattttccatgtggac 249  Q
    | ||||||| |||||||| ||||||||||||    
T  27339737 ctgaaactttcttctcatcttccatgtggac 27339767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 121 - 249
Target Start/End: Original strand, 27400378 - 27400507
Alignment:
Q  121 aacaagattagggtagcatagatctgaaatattatttctttcatatattttctcaagttttggctaccaaagtcaacacttttactac--catgtcaagt 218  Q
    ||||||||||||||| ||||||| ||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||  |||||  |||    
T  27400378 aacaagattagggtaacatagatatgaaatattctttccttcatttattttctcaagttttggctacc-aagtcaacacttttactaccgcatgttgagt 27400476  T
Q  219 ccgaaacttccttctcattttccatgtggac 249  Q
    | ||||||| |||||||| ||||||||||||    
T  27400477 ctgaaactttcttctcatcttccatgtggac 27400507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 27339283 - 27339364
Alignment:
Q  13 aatatgacctcttgaactaaatgattaattaatcatgcacacacaattattagtgtaagttgcaatattgaatgcttaatta 94  Q
    |||||||||| || |||||||||||||||||| |||||||||||||||||||||||| ||||  || |||||||||||||||    
T  27339283 aatatgacctgtttaactaaatgattaattaaccatgcacacacaattattagtgtaggttgttatgttgaatgcttaatta 27339364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 27400023 - 27400104
Alignment:
Q  13 aatatgacctcttgaactaaatgattaattaatcatgcacacacaattattagtgtaagttgcaatattgaatgcttaatta 94  Q
    |||||||||| || |||||||||||||||||| |||||||||||||||||||||||| ||||  || |||||||||||||||    
T  27400023 aatatgacctgtttaactaaatgattaattaaccatgcacacacaattattagtgtaggttgttatgttgaatgcttaatta 27400104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 27334389 - 27334466
Alignment:
Q  173 tcaagttttggctaccaaagtcaacacttttactacca-tgtcaagtccgaaacttccttctcattttccatgtggac 249  Q
    ||||||||  |||||||||||| ||||||||||||| | ||||||||| ||||||||||||| || ||||||||||||    
T  27334389 tcaagtttcagctaccaaagtctacacttttactactaatgtcaagtctgaaacttccttcttatcttccatgtggac 27334466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 27395129 - 27395206
Alignment:
Q  173 tcaagttttggctaccaaagtcaacacttttactacca-tgtcaagtccgaaacttccttctcattttccatgtggac 249  Q
    ||||||||  |||||||||||| ||||||||||||| | ||||||||| ||||||||||||| || ||||||||||||    
T  27395129 tcaagtttcagctaccaaagtctacacttttactactaatgtcaagtctgaaacttccttcttatcttccatgtggac 27395206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 27593746 - 27593802
Alignment:
Q  13 aatatgacctcttgaactaaatgattaattaatcatgcacacacaattattagtgta 69  Q
    ||||| ||| ||||||| ||||| |||||||| ||||||||||||||||||| ||||    
T  27593746 aatattaccacttgaaccaaatggttaattaaccatgcacacacaattattattgta 27593802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 27678324 - 27678268
Alignment:
Q  13 aatatgacctcttgaactaaatgattaattaatcatgcacacacaattattagtgta 69  Q
    ||||| ||| ||||||| ||||| |||||||| ||||||||||||||||||| ||||    
T  27678324 aatattaccacttgaaccaaatggttaattaaccatgcacacacaattattattgta 27678268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 249
Target Start/End: Original strand, 28164750 - 28164872
Alignment:
Q  121 aacaagattagggtagcatagatctgaaatattatttctttcatatattttctcaagttttggctaccaaagtcaacacttttactaccatgtcaagtcc 220  Q
    ||||||| |||| |||||||||| || |||||||| | || ||| |||||||| |||||||||||||| ||||| |||||||||||||     |||| |     
T  28164750 aacaagagtaggttagcatagatatgcaatattatctgttccatttattttctgaagttttggctacc-aagtctacacttttactac-----caagact 28164843  T
Q  221 gaaacttccttctcattttccatgtggac 249  Q
    |||||||||||||||| |||| |||||||    
T  28164844 gaaacttccttctcatcttccgtgtggac 28164872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 249
Target Start/End: Original strand, 28128883 - 28129012
Alignment:
Q  114 gttagttaacaagattagggtagcatagatctgaaatattatttctttcatatattttctcaagttttggctaccaaagtcaacacttttactaccatgt 213  Q
    ||||||||||| || |||| |||||| ||| || |||||| | |||| ||| |||||||| |||||||||||||| ||||| |||||||||||||         
T  28128883 gttagttaacatgagtaggctagcatggatatgcaatattctctcttccatttattttctgaagttttggctacc-aagtctacacttttactac----- 28128976  T
Q  214 caagtccgaaacttccttctcattttccatgtggac 249  Q
    |||| | |||||||||||||||| |||| |||||||    
T  28128977 caagactgaaacttccttctcatcttccgtgtggac 28129012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University