View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_high_21 (Length: 296)
Name: NF18521_high_21
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 17455089 - 17455239
Alignment:
| Q |
19 |
catttacaactactcaaatctgtattcttagcactacgcattagatcaaacaaatagaccctcaatcagaacaaaagacatccaagaacagcattgttga |
118 |
Q |
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| T |
17455089 |
catttacaactactcaaatctgtattcttagcactacgcattagatcaaacaaatagaccctcaatcagaacaaaagacatccaagaacagcattgttga |
17455188 |
T |
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| Q |
119 |
actctccatcacttgatcttggtcatcagtccatgtaaccttgggcagatt |
169 |
Q |
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| T |
17455189 |
actctccatcacttgatcttggtcatcagtccatgtaaccttgggcagatt |
17455239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 164 - 296
Target Start/End: Original strand, 17455390 - 17455522
Alignment:
| Q |
164 |
cagatttcatctctgatttatttttcgccgtgtccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaa |
263 |
Q |
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| T |
17455390 |
cagatttcatctctgatttatttttcgccgtgtccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaa |
17455489 |
T |
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| Q |
264 |
ttcaaatgacaagaatatggggacagtcagtgc |
296 |
Q |
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| T |
17455490 |
ttcaaatgacaagaatatggggacagtcagtgc |
17455522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 101 - 296
Target Start/End: Complemental strand, 17461704 - 17461502
Alignment:
| Q |
101 |
caagaacagcattgttgaactctccatcacttgatcttggtcatcagt----ccatgtaaccttgggcagatttcatctctgatttatttttcgccgtg- |
195 |
Q |
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| T |
17461704 |
caagaacagcattgttgagctctccatcacttgaccttggtcattggttggtccatttgaccttggaaaggttttagctctgatctatttttctccttaa |
17461605 |
T |
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| Q |
196 |
--tccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaattcaaatgacaagaatatggggacagtcag |
293 |
Q |
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| T |
17461604 |
cttccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatatggggacagtcag |
17461505 |
T |
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| Q |
294 |
tgc |
296 |
Q |
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| T |
17461504 |
tgc |
17461502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 17461808 - 17461737
Alignment:
| Q |
28 |
ctactcaaatctgtattcttagcactacgcattagatcaaacaaatagaccctcaatcagaacaaaagacat |
99 |
Q |
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| T |
17461808 |
ctactcaaatttgtatacttaacactacgaattagatcaaacaaatagaacctcaatcagaacaaaaaacat |
17461737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 296
Target Start/End: Complemental strand, 52143035 - 52142935
Alignment:
| Q |
196 |
tccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaattcaaatgacaagaatatggggacagtcagtg |
295 |
Q |
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| T |
52143035 |
tccaacaggaaacttccaccgttccatactgaagcagaaaccttaagtatttggaagattacatgcaattcatatgacaggaatatggggacagccagtg |
52142936 |
T |
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| Q |
296 |
c |
296 |
Q |
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| T |
52142935 |
c |
52142935 |
T |
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