View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_high_5 (Length: 509)
Name: NF18521_high_5
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 17 - 493
Target Start/End: Complemental strand, 2144930 - 2144458
Alignment:
| Q |
17 |
tgtgaaagaagagtctagagcaatctagtgattgttacttgaagcaactactagaccttgtattgtattatatagaggttaaggttgagggagagaagaa |
116 |
Q |
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| T |
2144930 |
tgtgaaagaagagtcaagagcaatctagtgaatgttacttgaagcaattactagaccttgtattgtattatatagacgttaaggttgagggagagaagaa |
2144831 |
T |
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| Q |
117 |
aaaaggttacctacattaaattaacaagagtaaattatttaggtgtatgtatacagcttctacctacgtgcctcttaacatagtttctcacgagagtatg |
216 |
Q |
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| T |
2144830 |
aaaaggttacctacattaaattaacaagagtaaattgtttaggtgtatgtatacagcttctacctacgtgccttttaacatagtttctcacgagagtatg |
2144731 |
T |
|
| Q |
217 |
tgtagccacaaatctatatactatatgctattagaattggaccatacattagatccatgtttgaactttatgacccatatgtcgtgtcctttgacaaaaa |
316 |
Q |
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| T |
2144730 |
tgtagccacaaatctatatactatatgctattagaattggaccatacattagatccatgttagaactttatgacccatacgtcgtgtcctttgacaaaga |
2144631 |
T |
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| Q |
317 |
cacctaactaatatggctctatttcgatcaaggtatgaatggcctagttaaagaggttgtgatcatctagttcaatttggtttaagacaaactatacaaa |
416 |
Q |
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| T |
2144630 |
cacctaactaatatggctctatttcgatcaaggtatgaatggcctagttaaagaggttgtgatcatctagttcaatttggtttaagacaaaatatgcaaa |
2144531 |
T |
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| Q |
417 |
ccctgatatatatggtagaaacctatgcttataacacttattttggctttatatagttttgagttattagtgttaac |
493 |
Q |
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| T |
2144530 |
ccctg----atatggtagaaacctatgcttaaaacacttattttggctttatatagttttgagttattagtgttaac |
2144458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 197 - 275
Target Start/End: Complemental strand, 2139411 - 2139335
Alignment:
| Q |
197 |
tagtttctcacgagagtatgtgtagccacaaatctatatactatatgctattagaattggaccatacattagatccatg |
275 |
Q |
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| T |
2139411 |
tagtttctcataagagtatgtgttgcccttaatctatatactat--gctattagaattggaccatacattagatccatg |
2139335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 399
Target Start/End: Complemental strand, 2139319 - 2139228
Alignment:
| Q |
301 |
tgtcctttgacaaaaacacctaactaatatggctctatttcgatcaaggtatgaatggcctagttaaagaggttgtgatcatctagttcaatttggttt |
399 |
Q |
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| T |
2139319 |
tgtcctttgacaaaagctcctaacaa---tggttatatttcaatcaaggtatg----gcttagttaaagaggttgtgaccctctagttcaatttggttt |
2139228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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