View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_low_1 (Length: 634)
Name: NF18521_low_1
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_low_1 |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 581; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 14 - 618
Target Start/End: Complemental strand, 25600912 - 25600308
Alignment:
| Q |
14 |
atatcttaagcattgaaatctggaagcattttcagtttttcactagacaaaagttcagtatgtctctttcatttcaatccattaaaataagagaaaacct |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25600912 |
atatcttaagcattgaaatctggaagcattttcagtttttcactaaacaaaagttcagtatgtctctttcatttcaatccattaaaataagagaaaacct |
25600813 |
T |
|
| Q |
114 |
accaaatacataagaatttcttcagctgtgtgaaatctatgtcaattgttttgagactttctggtgtgatgcaaaggctaaagaagggcatttgagaagt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25600812 |
accaaatacataagaatttcttcagctgtgtgaaatctatgtcaattgttttgagactttctagtgtgatgcaaaggctaaagaagggcatttgagaagt |
25600713 |
T |
|
| Q |
214 |
ttaaacttcaaggctatgaaacacagatatagacacgaaaccaatcacaacattgacactgacagggacacgtagaaaacagtaatgatttgagaaaata |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25600712 |
ttaaacttcaaggctatgaaacacagatatagacacgaaaccaatcacaacattgacactgacagggacacgtagaaaacagtaatgatttgagaaaata |
25600613 |
T |
|
| Q |
314 |
gaagtaatccaattgatatgacacttacatgtgtcaaatagtgaacacgcattcaaacgtattgtccttgttacttaacttcaatgtcgttcttattatt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25600612 |
gaagtaatccaattgatatgacacttacatgtgtcaaatagtgaacacacattcaatcgtattgtccttgttacttaacttcaatgtcgttcttattatt |
25600513 |
T |
|
| Q |
414 |
attattggaagaactcaatgataagagaaaagtaaattcaaaattatattgataatgagataatataaattacatcaaggagtacataaggtaactgtta |
513 |
Q |
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| T |
25600512 |
attattggaagaagtcaatgataagagaaaagtaaattcaaaattatattgataatgagataatataaattacatcaaggagtacataaggtaactgtta |
25600413 |
T |
|
| Q |
514 |
tatctaataactgtcaccagctgtttactatacattgcagacaactatcgaagaaagtaagggatcagatgctccactaatatcagcaccttcacttctt |
613 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25600412 |
tatataataactgtcaccagctgtttactatacattgcagacaactatcgaagaaagtaagggatcagatgctccactaatatcagcaccttcacttctt |
25600313 |
T |
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| Q |
614 |
acatg |
618 |
Q |
| |
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||||| |
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| T |
25600312 |
acatg |
25600308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 518 - 618
Target Start/End: Complemental strand, 25590756 - 25590656
Alignment:
| Q |
518 |
taataactgtcaccagctgtttactatacattgcagacaactatcgaagaaagtaagggatcagatgctccactaatatcagcaccttcacttcttacat |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25590756 |
taataactgtcaccagctgtttactatacattgcagacaactatcgaggaaagtaagggatcagatgctccactaatatcagcaccttcacttcttacat |
25590657 |
T |
|
| Q |
618 |
g |
618 |
Q |
| |
|
| |
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| T |
25590656 |
g |
25590656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 544 - 618
Target Start/End: Complemental strand, 25585847 - 25585773
Alignment:
| Q |
544 |
tacattgcagacaactatcgaagaaagtaagggatcagatgctccactaatatcagcaccttcacttcttacatg |
618 |
Q |
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| T |
25585847 |
tacattgcagacaactatagaagaaagtaagggatcagatgctccactaatatcagcacctttgcttcttacatg |
25585773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 25586019 - 25585954
Alignment:
| Q |
50 |
ttttcactagacaaaagttcagtatgtctctttcatttcaatccattaaaataagagaaaacctacc |
116 |
Q |
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|||||||||||||||| ||||| ||| |||||| ||||||||||||| ||| |||||||| ||||| |
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| T |
25586019 |
ttttcactagacaaaa-ttcagaatggctcttttatttcaatccattccaattagagaaaatctacc |
25585954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 25590872 - 25590839
Alignment:
| Q |
472 |
gataatataaattacatcaaggagtacataaggt |
505 |
Q |
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| T |
25590872 |
gataatataaactacatcaaggagtacataaggt |
25590839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 504
Target Start/End: Complemental strand, 10266 - 10218
Alignment:
| Q |
456 |
attatattgataatgagataatataaattacatcaaggagtacataagg |
504 |
Q |
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| T |
10266 |
attatattaattatgagataatataaattacatgaaggcatacataagg |
10218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 433 - 500
Target Start/End: Complemental strand, 26499159 - 26499095
Alignment:
| Q |
433 |
gataagagaaaagtaaattcaaaattatattgataatgagataatataaattacatcaaggagtacat |
500 |
Q |
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||||||||||||||||| | |||||||||||||| |||| ||| || ||||||||||||| |||||| |
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| T |
26499159 |
gataagagaaaagtaaa-tgaaaattatattgattatgaaata--atgaattacatcaaggggtacat |
26499095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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