View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_low_10 (Length: 438)
Name: NF18521_low_10
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 14 - 422
Target Start/End: Original strand, 26954636 - 26955049
Alignment:
| Q |
14 |
agacagtctcaatacttatccatgacatgacctgacattgcatttactgttaatataatctttcttagttcgtgcaaagattcactaccactcatttgac |
113 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26954636 |
agacagtgtcaatacttatccatgacatgacctgacattgcatttactgttaatataatctttcttagttcgtgcaaagatccactaccactcatttgac |
26954735 |
T |
|
| Q |
114 |
tcctctaaagaggattctgcgccgcctcaaaggtacaattttcatggcctttttcttcggaaacagaattcttctacactcattgcatataaggatactg |
213 |
Q |
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|||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26954736 |
tcctctaaagaggattctgcaccgcatcagaggtacaattttcatggcctttttcttcggaaacagaattcttctacactcattgcatataaggatactg |
26954835 |
T |
|
| Q |
214 |
attggactgataataaagatgactacacatctgctcacattgtctactagagttccaacctcatcttgtggaaatcatcg-----aagagcagtagcaag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26954836 |
attggactgataataaagatgactacacatctgctcacattgtctactagagttccaacctcatcttgtggaaatcatcgaagcaaagagcagtagcaag |
26954935 |
T |
|
| Q |
309 |
gtcatccaccaaggctaagtacaaagcattagccattattgcatcctggatcaactctcttctgactgaattgggtctctcttcctcaacattctctatt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26954936 |
gtcatccaccaaggctaagtacaaagcattagccattattgcatcctggatcaactctcttctgaatgaattgggtctctcttcctcaacattctctatt |
26955035 |
T |
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| Q |
409 |
ctttgggacaattt |
422 |
Q |
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|||||||||||||| |
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| T |
26955036 |
ctttgggacaattt |
26955049 |
T |
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