View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_low_11 (Length: 436)
Name: NF18521_low_11
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 36 - 418
Target Start/End: Original strand, 7143759 - 7144142
Alignment:
| Q |
36 |
ttgaaggaaggcaataatgaatgttaaaagcaatcaattcaagttgcatacgatgggtgcaagtgattttaagattttcacctaagaatgtagacaacac |
135 |
Q |
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| T |
7143759 |
ttgaaggaaggcaataatgaatgttaaaagcaatcaattcaagttgcatacgatgggtgcaagtgattttaagattttcacctaagaatgtagacaacac |
7143858 |
T |
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| Q |
136 |
attattcgttaggttttcttttgctatttttggtttggtttccagaacgaatttttccctaagtt-atggatcacaatatcccagaggctagatgaaata |
234 |
Q |
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| T |
7143859 |
attattcgttaggttttcttttgctatttttggtttggtttccagaacgaatttttccctaagttaatggatcacaatatcccagaggctagatgaaata |
7143958 |
T |
|
| Q |
235 |
actccacgtcatcatggaatnnnnnnnngtttgaccatcctattaaaatgtgccacgttacatgtttaattttcttcctnnnnnnnnnnnnttcccccta |
334 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7143959 |
actccacgtcatcatggaataaaaaaaagtttgaccatcctattaaaatgtgccacgttacatgtttaattttcttcctaaaaaagaaaaattcccccta |
7144058 |
T |
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| Q |
335 |
attacaaggcacagtggtacactnnnnnnngaaaagaaggtgcagtgatatttaagagttcgatgcaattaagaggcttaacta |
418 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7144059 |
attacaaggcacagtggtacagtaaaaaaagaaaagaaggtgcagtgatatttaagagttcgatgcaattaagaggcttaacta |
7144142 |
T |
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